This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TTC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.415648 (2 seq.)
>W1710798680
LJTU01000063
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
18289
18213
-
Glu
TTC
[ENA]
¡û
>W1610662637
LJTU01000063
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
18289
18213
-
Glu
TTC
[ENA]
¡û
Identical group No.551283 (4 seq.)
>W1710799173
LJUK01000021
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
296
221
-
Glu
TTC
[ENA]
¡û
>W1710799782
LJVB01000139
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
6167
6242
+
Glu
TTC
[ENA]
¡û
>W1610663130
LJUK01000021
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
296
221
-
Glu
TTC
[ENA]
¡û
>W1610663739
LJVB01000139
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
6167
6242
+
Glu
TTC
[ENA]
¡û
Identical group No.629920 (1 seq.)
>W131231766
AUIS01000004
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
73922
73997
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK