This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TTG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403575 (1 seq.)
>C09300007
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1030225
1030151
-
Gln
TTG
[Ensembl]
¡û
Identical group No.457045 (1 seq.)
>W11300866
AEFB01001108
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
537
463
-
Gln
TTG
[ENA]
¡û
Identical group No.491022 (9 seq.)
>W1711190280
LWRY01000155
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
5700
5627
-
Gln
TTG
[ENA]
¡û
>W1711190319
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
20897
20970
+
Gln
TTG
[ENA]
¡û
>W1711190423
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
7041
6968
-
Gln
TTG
[ENA]
¡û
>W1711190551
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
7073
7000
-
Gln
TTG
[ENA]
¡û
>W1711190599
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
13210
13137
-
Gln
TTG
[ENA]
¡û
>W1711190660
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
16712
16785
+
Gln
TTG
[ENA]
¡û
>W1711293185
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
7059
6986
-
Gln
TTG
[ENA]
¡û
>W141206808
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
6970
6897
-
Gln
TTG
[ENA]
¡û
>W1710743661
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
23436
23509
+
Gln
TTG
[ENA]
¡û
Identical group No.491383 (6 seq.)
>W1711190470
LWSA01000320
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
1772
1699
-
Gln
TTG
[ENA]
¡û
>W1711190516
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
3393
3466
+
Gln
TTG
[ENA]
¡û
>W1711190726
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
941
1014
+
Gln
TTG
[ENA]
¡û
>W1711293135
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
13272
13199
-
Gln
TTG
[ENA]
¡û
>W141206741
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
132682
132755
+
Gln
TTG
[ENA]
¡û
>W141695570
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
20360
20287
-
Gln
TTG
[ENA]
¡û
Identical group No.516533 (1 seq.)
>W141738818
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
12298
12371
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK