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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TTT
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.232027 (4 seq.)
>W1710799172
LJUK01000021
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
528
452
-
Lys
TTT
[ENA]
¡û
>W1710799781
LJVB01000139
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
5935
6011
+
Lys
TTT
[ENA]
¡û
>W1610663129
LJUK01000021
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
528
452
-
Lys
TTT
[ENA]
¡û
>W1610663738
LJVB01000139
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
5935
6011
+
Lys
TTT
[ENA]
¡û
Identical group No.275699 (1 seq.)
>W141738823
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
16674
16750
+
Lys
TTT
[ENA]
¡û
Identical group No.288681 (2 seq.)
>W141262929
CCCS020000035
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
239587
239512
-
Lys
TTT
[ENA]
¡û
>C09100407
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1028045
1027970
-
Lys
TTT
[Ensembl]
¡û
Identical group No.317911 (9 seq.)
>W1711190277
LWRY01000155
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
6283
6208
-
Lys
TTT
[ENA]
¡û
>W1711190316
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
20314
20389
+
Lys
TTT
[ENA]
¡û
>W1711190420
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
7624
7549
-
Lys
TTT
[ENA]
¡û
>W1711190548
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
7656
7581
-
Lys
TTT
[ENA]
¡û
>W1711190596
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
13793
13718
-
Lys
TTT
[ENA]
¡û
>W1711190657
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
16129
16204
+
Lys
TTT
[ENA]
¡û
>W1711293182
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
7642
7567
-
Lys
TTT
[ENA]
¡û
>W141206805
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
7553
7478
-
Lys
TTT
[ENA]
¡û
>W1710743658
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
22853
22928
+
Lys
TTT
[ENA]
¡û
Identical group No.319209 (6 seq.)
>W1711190370
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
9638
9713
+
Lys
TTT
[ENA]
¡û
>W1711190512
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
2318
2393
+
Lys
TTT
[ENA]
¡û
>W1711190722
LWSD01000254
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
103
28
-
Lys
TTT
[ENA]
¡û
>W1711293131
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
14347
14272
-
Lys
TTT
[ENA]
¡û
>W141206737
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
131607
131682
+
Lys
TTT
[ENA]
¡û
>W141695566
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
21769
21694
-
Lys
TTT
[ENA]
¡û
Identical group No.368438 (2 seq.)
>W10127952
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
607
532
-
Lys
TTT
[ENA]
¡û
>W11135497
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
607
532
-
Lys
TTT
[ENA]
¡û
Identical group No.385995 (1 seq.)
>W131231770
AUIS01000010
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
9553
9478
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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