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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteria
Anticodon = CAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659431 (4 seq.)
>W1910548797
FZOU01000001
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
904683
904757
+
Val
CAC
[ENA]
¡û
>W10119516
ADVY01000004
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
35833
35759
-
Val
CAC
[ENA]
¡û
>C11100551
CP002480
Acidobacteriota
Granulicella tundricola MP5ACTX9 [CP002480]
3017176
3017102
-
Val
CAC
[Ensembl]
¡û
>W11125782
ADVY01000004
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
35833
35759
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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