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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteria
Anticodon = CCA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462613 (15 seq.)
>W1711502584
MKSV01000007
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
430
505
+
Trp
CCA
[ENA]
¡û
>W131179204
ARME01000011
Acidobacteriota
Acidobacteriaceae bacterium KBS 89 [ARME]
340979
340904
-
Trp
CCA
[ENA]
¡û
>W131216800
ATWD01000001
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
4223413
4223488
+
Trp
CCA
[ENA]
¡û
>WENV180017310
FSWS01000085
[FSWS] metagenome; soil
9985
9910
-
Trp
CCA
[ENA]
¢þ
>WENV183093184
OLLV01000122
[OLLV] soil metagenome; soil
130480
130405
-
Trp
CCA
[ENA]
¢þ
>WENV183697561
OUNK010001409
[OUNK] metagenome; soil
669
744
+
Trp
CCA
[ENA]
¢þ
>WENV170998439
MWWJ01018051
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
419
344
-
Trp
CCA
[ENA]
¢þ
>W141557305
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
1805211
1805136
-
Trp
CCA
[ENA]
¡û
>W141817046
JQKI01000029
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
1189
1264
+
Trp
CCA
[ENA]
¡û
>W1910548840
FZOU01000011
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
122705
122630
-
Trp
CCA
[ENA]
¡û
>W10119539
ADVY01000024
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
1117
1192
+
Trp
CCA
[ENA]
¡û
>C11100530
CP002480
Acidobacteriota
Granulicella tundricola MP5ACTX9 [CP002480]
1098010
1098085
+
Trp
CCA
[Ensembl]
¡û
>W11125805
ADVY01000024
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
1117
1192
+
Trp
CCA
[ENA]
¡û
>W1710539044
FNVA01000002
Acidobacteriota
Bryocella elongata [FNVA]
409010
409085
+
Trp
CCA
[ENA]
¡û
>W1710575777
FOZL01000002
Acidobacteriota
Granulicella pectinivorans [FOZL]
553913
553838
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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