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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteria
Anticodon = CGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462607 (12 seq.)
>W1711502573
MKSV01000003
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
46645
46570
-
Thr
CGT
[ENA]
¡û
>W131179212
ARME01000013
Acidobacteriota
Acidobacteriaceae bacterium KBS 89 [ARME]
24732
24657
-
Thr
CGT
[ENA]
¡û
>WENV180017313
FSWS01000131
[FSWS] metagenome; soil
23008
23083
+
Thr
CGT
[ENA]
¢þ
>WENV180018225
FSYS01001740
[FSYS] metagenome; soil
1770
1695
-
Thr
CGT
[ENA]
¢þ
>WENV183093203
OLLV01000209
[OLLV] soil metagenome; soil
20819
20744
-
Thr
CGT
[ENA]
¢þ
>WENV183697544
OUNK010000804
[OUNK] metagenome; soil
82
7
-
Thr
CGT
[ENA]
¢þ
>WENV183697789
OUNK010113808
[OUNK] metagenome; soil
1599
1524
-
Thr
CGT
[ENA]
¢þ
>W1910548837
FZOU01000007
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
58768
58843
+
Thr
CGT
[ENA]
¡û
>W10119512
ADVY01000003
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
99189
99114
-
Thr
CGT
[ENA]
¡û
>C11100563
CP002480
Acidobacteriota
Granulicella tundricola MP5ACTX9 [CP002480]
630670
630595
-
Thr
CGT
[Ensembl]
¡û
>W11125778
ADVY01000003
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
99189
99114
-
Thr
CGT
[ENA]
¡û
>W1710575735
FOZL01000001
Acidobacteriota
Granulicella pectinivorans [FOZL]
66926
67001
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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