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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteria
Anticodon = GAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281055 (14 seq.)
>WENV181191145
OEPS010029270
[OEPS] soil metagenome; soil
383
307
-
Val
GAC
[ENA]
¢þ
>WENV183698134
OUNK011150768
[OUNK] metagenome; soil
20784
20860
+
Val
GAC
[ENA]
¢þ
>WENV170998998
MWWJ01198258
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
320
396
+
Val
GAC
[ENA]
¢þ
>W141557295
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
3981656
3981580
-
Val
GAC
[ENA]
¡û
>W141564062
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
1629315
1629239
-
Val
GAC
[ENA]
¡û
>W141817019
JQKI01000003
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
164945
165021
+
Val
GAC
[ENA]
¡û
>W1910548796
FZOU01000001
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
219147
219223
+
Val
GAC
[ENA]
¡û
>C09100230
CP001472
Acidobacteriota
Acidobacterium capsulatum ATCC 51196 [CP001472]
2949049
2948973
-
Val
GAC
[Ensembl]
¡û
>W10119489
ADVX01000009
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
7362
7438
+
Val
GAC
[ENA]
¡û
>W10119535
ADVY01000020
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
30939
31015
+
Val
GAC
[ENA]
¡û
>C11100543
CP002480
Acidobacteriota
Granulicella tundricola MP5ACTX9 [CP002480]
4200361
4200437
+
Val
GAC
[Ensembl]
¡û
>W11125755
ADVX01000009
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
7362
7438
+
Val
GAC
[ENA]
¡û
>W11125801
ADVY01000020
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
30939
31015
+
Val
GAC
[ENA]
¡û
>C121006489
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
590226
590302
+
Val
GAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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