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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteria
Anticodon = GAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181926 (26 seq.)
>W1711502594
MKSV01000007
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
848754
848670
-
Leu
GAG
[ENA]
¡û
>W131179188
ARME01000007
Acidobacteriota
Acidobacteriaceae bacterium KBS 89 [ARME]
153152
153068
-
Leu
GAG
[ENA]
¡û
>WENV180017441
FSXA01000379
[FSXA] metagenome; soil
2586
2502
-
Leu
GAG
[ENA]
¢þ
>WENV180017464
FSXA01000923
[FSXA] metagenome; soil
2564
2646
+
Leu
GAG
[ENA]
¢þ
>WENV180017481
FSXA01001236
[FSXA] metagenome; soil
5235
5317
+
Leu
GAG
[ENA]
¢þ
>WENV180017494
FSXA01001413
[FSXA] metagenome; soil
252
168
-
Leu
GAG
[ENA]
¢þ
>WENV180017497
FSXA01001477
[FSXA] metagenome; soil
2524
2440
-
Leu
GAG
[ENA]
¢þ
>WENV180017877
FSXT01000543
[FSXT] metagenome; soil
2052
2136
+
Leu
GAG
[ENA]
¢þ
>WENV180308997
OBJR01408924
[OBJR] soil metagenome; soil
225
141
-
Leu
GAG
[ENA]
¢þ
>WENV181192900
OEPS011195292
[OEPS] soil metagenome; soil
22
106
+
Leu
GAG
[ENA]
¢þ
>WENV183093210
OLLV01000220
[OLLV] soil metagenome; soil
83
1
-
Leu
GAG
[ENA]
¢þ
>WENV183697907
OUNK010333257
[OUNK] metagenome; soil
508
424
-
Leu
GAG
[ENA]
¢þ
>WENV183697953
OUNK010479056
[OUNK] metagenome; soil
1001
1085
+
Leu
GAG
[ENA]
¢þ
>WENV183697972
OUNK010583912
[OUNK] metagenome; soil
303
219
-
Leu
GAG
[ENA]
¢þ
>W1910548805
FZOU01000002
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
352872
352956
+
Leu
GAG
[ENA]
¡û
>W10119466
ADVX01000002
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
523193
523109
-
Leu
GAG
[ENA]
¡û
>W10119507
ADVY01000001
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
35108
35024
-
Leu
GAG
[ENA]
¡û
>C11100559
CP002480
Acidobacteriota
Granulicella tundricola MP5ACTX9 [CP002480]
1782439
1782355
-
Leu
GAG
[Ensembl]
¡û
>C11123022
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
2299604
2299520
-
Leu
GAG
[Ensembl]
¡û
>W11125732
ADVX01000002
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
523193
523109
-
Leu
GAG
[ENA]
¡û
>W11125773
ADVY01000001
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
35108
35024
-
Leu
GAG
[ENA]
¡û
>W11137294
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
2368606
2368522
-
Leu
GAG
[ENA]
¡û
>C121006525
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
2899214
2899130
-
Leu
GAG
[Ensembl]
¡û
>W1610576076
LAIJ01000002
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
314350
314434
+
Leu
GAG
[ENA]
¡û
>W1710575748
FOZL01000001
Acidobacteriota
Granulicella pectinivorans [FOZL]
3563892
3563976
+
Leu
GAG
[ENA]
¡û
>W1710694340
LAIJ01000002
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
314350
314434
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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