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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteria
Anticodon = GGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462610 (36 seq.)
>W1711502597
MKSV01000008
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
334108
334033
-
Ala
GGC
[ENA]
¡û
>W131179194
ARME01000009
Acidobacteriota
Acidobacteriaceae bacterium KBS 89 [ARME]
285662
285737
+
Ala
GGC
[ENA]
¡û
>W131216788
ATWD01000001
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
1963709
1963784
+
Ala
GGC
[ENA]
¡û
>WENV180017442
FSXA01000400
[FSXA] metagenome; soil
114
189
+
Ala
GGC
[ENA]
¢þ
>WENV180017452
FSXA01000609
[FSXA] metagenome; soil
3822
3747
-
Ala
GGC
[ENA]
¢þ
>WENV180017503
FSXC01000066
[FSXC] metagenome; soil
3633
3708
+
Ala
GGC
[ENA]
¢þ
>WENV180017881
FSXT01000728
[FSXT] metagenome; soil
23
98
+
Ala
GGC
[ENA]
¢þ
>WENV180018203
FSYS01001182
[FSYS] metagenome; soil
3401
3476
+
Ala
GGC
[ENA]
¢þ
>WENV180099704
NMRC01023426
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
779
704
-
Ala
GGC
[ENA]
¢þ
>WENV181145104
OEHO01195779
[OEHO] metagenome; unknown
98
173
+
Ala
GGC
[ENA]
¢þ
>WENV183697545
OUNK010000844
[OUNK] metagenome; soil
8982
8907
-
Ala
GGC
[ENA]
¢þ
>WENV170564375
CZKL01000170
[CZKL] soil metagenome genome assembly CiPEHR-AK-2010-FBin.16, contig:; soil
14100
14175
+
Ala
GGC
[ENA]
¢þ
>WENV170998770
MWWJ01105657
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
419
344
-
Ala
GGC
[ENA]
¢þ
>C181193316
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
4591778
4591703
-
Ala
GGC
-
¡û
>W141557283
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
2448401
2448476
+
Ala
GGC
[ENA]
¡û
>W141564300
JIAQ01000018
Acidobacteriota
Acidobacteriaceae bacterium URHE0068 [JIAQ]
43007
42932
-
Ala
GGC
[ENA]
¡û
>W141817047
JQKI01000034
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
2793
2868
+
Ala
GGC
[ENA]
¡û
>C09100236
CP001472
Acidobacteriota
Acidobacterium capsulatum ATCC 51196 [CP001472]
2336736
2336661
-
Ala
GGC
[Ensembl]
¡û
>W1910548823
FZOU01000004
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
443811
443736
-
Ala
GGC
[ENA]
¡û
>W1911748648
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
2279887
2279812
-
Ala
GGC
[ENA]
¡û
>W1810587167
QFFY01000007
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
85399
85474
+
Ala
GGC
[ENA]
¡û
>W1810915059
QVQT01000005
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
205705
205630
-
Ala
GGC
[ENA]
¡û
>W10119456
ADVX01000001
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
859447
859372
-
Ala
GGC
[ENA]
¡û
>W10119532
ADVY01000015
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
25879
25804
-
Ala
GGC
[ENA]
¡û
>C11100549
CP002480
Acidobacteriota
Granulicella tundricola MP5ACTX9 [CP002480]
3671284
3671209
-
Ala
GGC
[Ensembl]
¡û
>C11123007
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
4397959
4397884
-
Ala
GGC
[Ensembl]
¡û
>W1511432668
JUGR01000001
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
2195088
2195163
+
Ala
GGC
[ENA]
¡û
>W11125722
ADVX01000001
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
859447
859372
-
Ala
GGC
[ENA]
¡û
>W11125798
ADVY01000015
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
25879
25804
-
Ala
GGC
[ENA]
¡û
>W11137279
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
4454242
4454167
-
Ala
GGC
[ENA]
¡û
>W1511591141
LBHJ01000020
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
125688
125763
+
Ala
GGC
[ENA]
¡û
>C121006533
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
352265
352190
-
Ala
GGC
[Ensembl]
¡û
>W1610576096
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
2346880
2346955
+
Ala
GGC
[ENA]
¡û
>W1710539064
FNVA01000007
Acidobacteriota
Bryocella elongata [FNVA]
345292
345367
+
Ala
GGC
[ENA]
¡û
>W1710575742
FOZL01000001
Acidobacteriota
Granulicella pectinivorans [FOZL]
1740473
1740548
+
Ala
GGC
[ENA]
¡û
>W1710694360
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
2346880
2346955
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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