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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteria
Anticodon = GTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281049 (21 seq.)
>W1711502575
MKSV01000004
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
196583
196659
+
Asp
GTC
[ENA]
¡û
>W131179180
ARME01000007
Acidobacteriota
Acidobacteriaceae bacterium KBS 89 [ARME]
662976
663052
+
Asp
GTC
[ENA]
¡û
>W131216784
ATWD01000001
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
635234
635310
+
Asp
GTC
[ENA]
¡û
>WENV180017448
FSXA01000491
[FSXA] metagenome; soil
27911
27835
-
Asp
GTC
[ENA]
¢þ
>WENV181190873
OEPS010006037
[OEPS] soil metagenome; soil
2925
2849
-
Asp
GTC
[ENA]
¢þ
>WENV170998462
MWWJ01022237
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
480
556
+
Asp
GTC
[ENA]
¢þ
>C181193305
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
4532509
4532585
+
Asp
GTC
-
¡û
>W141557293
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
4724693
4724769
+
Asp
GTC
[ENA]
¡û
>W141817063
JQKI01000093
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
9749
9825
+
Asp
GTC
[ENA]
¡û
>W1910548806
FZOU01000002
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
364412
364488
+
Asp
GTC
[ENA]
¡û
>W1911748640
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
4122327
4122251
-
Asp
GTC
[ENA]
¡û
>W1810587129
QFFY01000001
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
312897
312973
+
Asp
GTC
[ENA]
¡û
>W10119481
ADVX01000007
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
50346
50422
+
Asp
GTC
[ENA]
¡û
>W10119520
ADVY01000005
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
61822
61746
-
Asp
GTC
[ENA]
¡û
>C11100553
CP002480
Acidobacteriota
Granulicella tundricola MP5ACTX9 [CP002480]
2699537
2699461
-
Asp
GTC
[Ensembl]
¡û
>W1511432661
JUGR01000001
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
945954
946030
+
Asp
GTC
[ENA]
¡û
>W11125747
ADVX01000007
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
50346
50422
+
Asp
GTC
[ENA]
¡û
>W11125786
ADVY01000005
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
61822
61746
-
Asp
GTC
[ENA]
¡û
>W1511591111
LBHJ01000003
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
1135062
1134986
-
Asp
GTC
[ENA]
¡û
>C121006497
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
1715401
1715477
+
Asp
GTC
[Ensembl]
¡û
>W1710539071
FNVA01000011
Acidobacteriota
Bryocella elongata [FNVA]
45801
45877
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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