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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteria
Anticodon = GTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659426 (26 seq.)
>W1711502595
MKSV01000007
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
702233
702159
-
Asn
GTT
[ENA]
¡û
>W131179206
ARME01000011
Acidobacteriota
Acidobacteriaceae bacterium KBS 89 [ARME]
10326
10252
-
Asn
GTT
[ENA]
¡û
>W131216802
ATWD01000001
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
4663680
4663754
+
Asn
GTT
[ENA]
¡û
>WENV180017480
FSXA01001201
[FSXA] metagenome; soil
7246
7172
-
Asn
GTT
[ENA]
¢þ
>WENV180017485
FSXA01001271
[FSXA] metagenome; soil
1371
1445
+
Asn
GTT
[ENA]
¢þ
>WENV180017875
FSXT01000435
[FSXT] metagenome; soil
5602
5676
+
Asn
GTT
[ENA]
¢þ
>WENV180018186
FSYS01000450
[FSYS] metagenome; soil
3810
3736
-
Asn
GTT
[ENA]
¢þ
>WENV180018200
FSYS01001127
[FSYS] metagenome; soil
6574
6648
+
Asn
GTT
[ENA]
¢þ
>WENV180019143
FTBI01000132
[FTBI] metagenome; soil
3852
3926
+
Asn
GTT
[ENA]
¢þ
>WENV183093211
OLLV01000232
[OLLV] soil metagenome; soil
54114
54188
+
Asn
GTT
[ENA]
¢þ
>WENV183697538
OUNK010000584
[OUNK] metagenome; soil
5487
5413
-
Asn
GTT
[ENA]
¢þ
>WENV183697898
OUNK010290760
[OUNK] metagenome; soil
170
244
+
Asn
GTT
[ENA]
¢þ
>WENV183697940
OUNK010441021
[OUNK] metagenome; soil
2019
2093
+
Asn
GTT
[ENA]
¢þ
>WENV170554139
CXWK01048628
[CXWK] wastewater metagenome; activated sludge
804
876
+
Asn
GTT
[ENA]
¢þ
>W141817045
JQKI01000026
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
14567
14493
-
Asn
GTT
[ENA]
¡û
>W1910548818
FZOU01000003
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
555700
555774
+
Asn
GTT
[ENA]
¡û
>W10119463
ADVX01000002
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
897171
897097
-
Asn
GTT
[ENA]
¡û
>W10119504
ADVY01000001
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
334553
334479
-
Asn
GTT
[ENA]
¡û
>C11100556
CP002480
Acidobacteriota
Granulicella tundricola MP5ACTX9 [CP002480]
2081883
2081809
-
Asn
GTT
[Ensembl]
¡û
>C11122992
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
1425419
1425493
+
Asn
GTT
[Ensembl]
¡û
>W11125729
ADVX01000002
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
897171
897097
-
Asn
GTT
[ENA]
¡û
>W11125770
ADVY01000001
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
334553
334479
-
Asn
GTT
[ENA]
¡û
>W11137264
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
1494421
1494495
+
Asn
GTT
[ENA]
¡û
>C121006522
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
3273192
3273118
-
Asn
GTT
[Ensembl]
¡û
>W1710539053
FNVA01000004
Acidobacteriota
Bryocella elongata [FNVA]
469952
470026
+
Asn
GTT
[ENA]
¡û
>W1710575756
FOZL01000001
Acidobacteriota
Granulicella pectinivorans [FOZL]
4245475
4245401
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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