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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteria
Anticodon = TGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462609 (20 seq.)
>WENV180099595
NMRC01020547
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
315
240
-
Ala
TGC
[ENA]
¢þ
>WENV181193087
OEPS011437742
[OEPS] soil metagenome; soil
98
23
-
Ala
TGC
[ENA]
¢þ
>W141557289
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
4069802
4069877
+
Ala
TGC
[ENA]
¡û
>W1910548834
FZOU01000006
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
240927
240852
-
Ala
TGC
[ENA]
¡û
>W1910548836
FZOU01000006
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
223169
223094
-
Ala
TGC
[ENA]
¡û
>W10119491
ADVX01000009
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
110267
110342
+
Ala
TGC
[ENA]
¡û
>W10119531
ADVY01000015
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
84877
84802
-
Ala
TGC
[ENA]
¡û
>C11100548
CP002480
Acidobacteriota
Granulicella tundricola MP5ACTX9 [CP002480]
3730282
3730207
-
Ala
TGC
[Ensembl]
¡û
>C11123016
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
3872134
3872059
-
Ala
TGC
[Ensembl]
¡û
>W1511432674
JUGR01000001
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
3429512
3429587
+
Ala
TGC
[ENA]
¡û
>W11125757
ADVX01000009
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
110267
110342
+
Ala
TGC
[ENA]
¡û
>W11125797
ADVY01000015
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
84877
84802
-
Ala
TGC
[ENA]
¡û
>W11137288
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
3928417
3928342
-
Ala
TGC
[ENA]
¡û
>C121006491
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
693131
693206
+
Ala
TGC
[Ensembl]
¡û
>C121011797
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
926281
926356
+
Ala
TGC
[Ensembl]
¡û
>C121011802
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
2076383
2076458
+
Ala
TGC
[Ensembl]
¡û
>W1710534867
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
2832984
2833059
+
Ala
TGC
[ENA]
¡û
>W1710534892
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
1637780
1637705
-
Ala
TGC
[ENA]
¡û
>W1710539074
FNVA01000015
Acidobacteriota
Bryocella elongata [FNVA]
2722
2797
+
Ala
TGC
[ENA]
¡û
>W1710575755
FOZL01000001
Acidobacteriota
Granulicella pectinivorans [FOZL]
4436620
4436545
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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