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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteria
Anticodon = TGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462614 (7 seq.)
>WENV183093193
OLLV01000144
[OLLV] soil metagenome; soil
24915
24990
+
Thr
TGT
[ENA]
¢þ
>WENV183697830
OUNK010168334
[OUNK] metagenome; soil
1548
1473
-
Thr
TGT
[ENA]
¢þ
>WENV170998766
MWWJ01104929
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
173
248
+
Thr
TGT
[ENA]
¢þ
>W10119541
ADVY01000029
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
42159
42234
+
Thr
TGT
[ENA]
¡û
>C11100527
CP002480
Acidobacteriota
Granulicella tundricola MP5ACTX9 [CP002480]
1094453
1094528
+
Thr
TGT
[Ensembl]
¡û
>W11125807
ADVY01000029
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
42159
42234
+
Thr
TGT
[ENA]
¡û
>W1710575774
FOZL01000002
Acidobacteriota
Granulicella pectinivorans [FOZL]
556482
556407
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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