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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = ACG
HIT:
33 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.255016 (1 seq.)
>W131179236
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1171406
1171483
+
Arg
ACG
[ENA]
¡û
Identical group No.299356 (1 seq.)
>W1810587132
QFFY01000001
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
1202701
1202777
+
Arg
ACG
[ENA]
¡û
Identical group No.302396 (1 seq.)
>W1710534880
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
4529169
4529093
-
Arg
ACG
[ENA]
¡û
Identical group No.320938 (2 seq.)
>W1610576112
LAIJ01000010
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
395459
395383
-
Arg
ACG
[ENA]
¡û
>W1710694376
LAIJ01000010
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
395459
395383
-
Arg
ACG
[ENA]
¡û
Identical group No.336558 (1 seq.)
>W1910697372
MEKQ01000136
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20 [MEKQ]
179
255
+
Arg
ACG
[ENA]
¡û
Identical group No.336560 (1 seq.)
>W1910697623
MEKX01000016
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
1394
1318
-
Arg
ACG
[ENA]
¡û
Identical group No.338418 (1 seq.)
>W1710575773
FOZL01000002
Acidobacteriota
Granulicella pectinivorans [FOZL]
729444
729520
+
Arg
ACG
[ENA]
¡û
Identical group No.338896 (1 seq.)
>W1711574172
MNEX01000008
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_65_14 [MNEX]
18631
18707
+
Arg
ACG
[ENA]
¡û
Identical group No.361144 (2 seq.)
>W1710893888
LNFE01000276
Acidobacteriota
Acidobacteria bacterium Ga0077553 [LNFE]
56709
56633
-
Arg
ACG
[ENA]
¡û
>W1610754154
LNFE01000276
Acidobacteriota
Acidobacteria bacterium Ga0077553 [LNFE]
56709
56633
-
Arg
ACG
[ENA]
¡û
Identical group No.362974 (1 seq.)
>C121011828
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
1899772
1899696
-
Arg
ACG
[Ensembl]
¡û
Identical group No.371271 (2 seq.)
>W1910697282
MEKM01000108
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
815
739
-
Arg
ACG
[ENA]
¡û
>W1910697333
MEKO01000136
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
806
730
-
Arg
ACG
[ENA]
¡û
Identical group No.373256 (2 seq.)
>W1711574197
MNEY01000026
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_56_16 [MNEY]
750
825
+
Arg
ACG
[ENA]
¡û
>W1711576158
MNKP01000143
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_55_15 [MNKP]
513
588
+
Arg
ACG
[ENA]
¡û
Identical group No.373628 (2 seq.)
>C11123024
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
1745389
1745313
-
Arg
ACG
[Ensembl]
¡û
>W11137296
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
1814391
1814315
-
Arg
ACG
[ENA]
¡û
Identical group No.374231 (1 seq.)
>C000164
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
4776758
4776834
+
Arg
ACG
[Ensembl]
¡û
Identical group No.380295 (1 seq.)
>W1910697694
MEKY01000175
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
16086
16162
+
Arg
ACG
[ENA]
¡û
Identical group No.380298 (2 seq.)
>W1910697422
MEKS01000020
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 [MEKS]
48298
48374
+
Arg
ACG
[ENA]
¡û
>W1910697735
MELA01000079
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11 [MELA]
9412
9336
-
Arg
ACG
[ENA]
¡û
Identical group No.380537 (1 seq.)
>W1810046992
OKRE01000153
Acidobacteriota
Candidatus Sulfotelmatobacter sp. SbA7 SbA7 Peat soil MAG SbA7 [OKRE]
973
1049
+
Arg
ACG
[ENA]
¡û
Identical group No.388775 (1 seq.)
>W1910697723
MEKZ01000392
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
3914
3838
-
Arg
ACG
[ENA]
¡û
Identical group No.392117 (1 seq.)
>W1710539033
FNVA01000001
Acidobacteriota
Bryocella elongata [FNVA]
954141
954217
+
Arg
ACG
[ENA]
¡û
Identical group No.393510 (1 seq.)
>W141696003
JMFG01000002
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
157844
157920
+
Arg
ACG
[ENA]
¡û
Identical group No.393688 (1 seq.)
>W1511432686
JUGR01000001
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
451882
451806
-
Arg
ACG
[ENA]
¡û
Identical group No.406709 (1 seq.)
>W1911748621
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
93912
93988
+
Arg
ACG
[ENA]
¡û
Identical group No.406733 (1 seq.)
>W1810047220
OMOG01000102
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
27762
27838
+
Arg
ACG
[ENA]
¡û
Identical group No.406926 (1 seq.)
>W1810915062
QVQT01000006
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
232434
232510
+
Arg
ACG
[ENA]
¡û
Identical group No.415890 (2 seq.)
>W1610083347
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
168378
168302
-
Arg
ACG
[ENA]
¡û
>W1710088364
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
168378
168302
-
Arg
ACG
[ENA]
¡û
Identical group No.416387 (1 seq.)
>W1711575897
MNJR01000055
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
3276
3203
-
Arg
ACG
[ENA]
¡û
Identical group No.428396 (1 seq.)
>C181193293
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
1354544
1354620
+
Arg
ACG
-
¡û
Identical group No.429694 (1 seq.)
>W1711391116
MEKI01000018
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
27076
27000
-
Arg
ACG
[ENA]
¡û
Identical group No.429844 (1 seq.)
>W1711573392
MNDC01000005
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
4857
4781
-
Arg
ACG
[ENA]
¡û
Identical group No.440539 (1 seq.)
>W1711575015
MNGW01000150
Acidobacteriota
Acidobacteriales bacterium 13_1_40CM_3_55_5 [MNGW]
13749
13825
+
Arg
ACG
[ENA]
¡û
Identical group No.441708 (1 seq.)
>W141564051
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
3633979
3633903
-
Arg
ACG
[ENA]
¡û
Identical group No.446641 (1 seq.)
>W1711391218
MEKL01000153
Acidobacteriota
Acidobacteria bacterium RBG_16_70_10 [MEKL]
1339
1263
-
Arg
ACG
[ENA]
¡û
Identical group No.447261 (1 seq.)
>W131179122
ARMD01000012
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
168043
167967
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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