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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = CAA
HIT:
46 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.78442 (2 seq.)
>W1910697503
MEKU01000020
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 [MEKU]
61984
61896
-
Leu
CAA
[ENA]
¡û
>W1910697842
MELD01000094
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14 [MELD]
72098
72186
+
Leu
CAA
[ENA]
¡û
Identical group No.78444 (2 seq.)
>W1910697574
MEKV01000122
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
4591
4503
-
Leu
CAA
[ENA]
¡û
>W1910697775
MELC01000005
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
4596
4508
-
Leu
CAA
[ENA]
¡û
Identical group No.80264 (2 seq.)
>W1910697581
MEKW01000004
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 [MEKW]
6753
6841
+
Leu
CAA
[ENA]
¡û
>W1910697935
MELF01000052
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 [MELF]
6811
6899
+
Leu
CAA
[ENA]
¡û
Identical group No.80517 (1 seq.)
>C000148
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
478049
478137
+
Leu
CAA
[Ensembl]
¡û
Identical group No.81080 (2 seq.)
>W1910697438
MEKS01000047
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 [MEKS]
40136
40222
+
Leu
CAA
[ENA]
¡û
>W1910697737
MELA01000080
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11 [MELA]
6056
6142
+
Leu
CAA
[ENA]
¡û
Identical group No.81096 (1 seq.)
>W1810047038
OKRH01000139
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA6 SbA6 Peat soil MAG SbA6 [OKRH]
13185
13097
-
Leu
CAA
[ENA]
¡û
Identical group No.81333 (2 seq.)
>C024926
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
9855438
9855350
-
Leu
CAA
[Ensembl]
¡û
>W09102626
AAIA01000069
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
38232
38144
-
Leu
CAA
[ENA]
¡û
Identical group No.84034 (2 seq.)
>W1610083336
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
894662
894750
+
Leu
CAA
[ENA]
¡û
>W1710088353
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
894662
894750
+
Leu
CAA
[ENA]
¡û
Identical group No.86456 (1 seq.)
>W1711384765
MEDJ01000009
Acidobacteriota
Acidobacteria bacterium SCN 69-37 [MEDJ]
197540
197628
+
Leu
CAA
[ENA]
¡û
Identical group No.86514 (1 seq.)
>W141730248
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
1893799
1893887
+
Leu
CAA
[ENA]
¡û
Identical group No.90356 (1 seq.)
>W1810047097
OMOD01000138
Acidobacteriota
Candidatus Sulfotelmatobacter kueseliae SbA1 Peat soil MAG SbA1 [OMOD]
3558
3471
-
Leu
CAA
[ENA]
¡û
Identical group No.95450 (1 seq.)
>W1910697630
MEKX01000047
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
23657
23744
+
Leu
CAA
[ENA]
¡û
Identical group No.99351 (2 seq.)
>W141557310
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
1305573
1305486
-
Leu
CAA
[ENA]
¡û
>W1810915042
QVQT01000003
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
666035
665948
-
Leu
CAA
[ENA]
¡û
Identical group No.101822 (1 seq.)
>W1910697651
MEKY01000006
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
5373
5286
-
Leu
CAA
[ENA]
¡û
Identical group No.103034 (1 seq.)
>W1910697712
MEKZ01000215
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
13442
13355
-
Leu
CAA
[ENA]
¡û
Identical group No.103683 (1 seq.)
>C09100208
CP001472
Acidobacteriota
Acidobacterium capsulatum ATCC 51196 [CP001472]
1796994
1797081
+
Leu
CAA
[Ensembl]
¡û
Identical group No.103686 (1 seq.)
>W121017789
AGSB01000062
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
102618
102531
-
Leu
CAA
[ENA]
¡û
Identical group No.104634 (1 seq.)
>W1711574221
MNEY01000235
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_56_16 [MNEY]
11962
12047
+
Leu
CAA
[ENA]
¡û
Identical group No.111421 (1 seq.)
>W1910697866
MELE01000073
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b [MELE]
1166
1253
+
Leu
CAA
[ENA]
¡û
Identical group No.111440 (1 seq.)
>W1810046940
OKRB01000097
Acidobacteriota
Candidatus Sulfotelmatomonas gaucii SbA5 Peat soil MAG SbA5 [OKRB]
29521
29608
+
Leu
CAA
[ENA]
¡û
Identical group No.111609 (1 seq.)
>W1711391220
MEKL01000162
Acidobacteriota
Acidobacteria bacterium RBG_16_70_10 [MEKL]
111
24
-
Leu
CAA
[ENA]
¡û
Identical group No.111620 (1 seq.)
>W1711574669
MNFW01000103
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_58_4 [MNFW]
13136
13223
+
Leu
CAA
[ENA]
¡û
Identical group No.113521 (1 seq.)
>W1711573436
MNDE01000002
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
691
777
+
Leu
CAA
[ENA]
¡û
Identical group No.118071 (1 seq.)
>W1810047079
OMOD01000036
Acidobacteriota
Candidatus Sulfotelmatobacter kueseliae SbA1 Peat soil MAG SbA1 [OMOD]
1802
1888
+
Leu
CAA
[ENA]
¡û
Identical group No.118752 (1 seq.)
>W1710534871
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
3808875
3808961
+
Leu
CAA
[ENA]
¡û
Identical group No.123040 (3 seq.)
>W1610576099
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
1844792
1844706
-
Leu
CAA
[ENA]
¡û
>W1710539052
FNVA01000004
Acidobacteriota
Bryocella elongata [FNVA]
298668
298754
+
Leu
CAA
[ENA]
¡û
>W1710694363
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
1844792
1844706
-
Leu
CAA
[ENA]
¡û
Identical group No.123866 (1 seq.)
>W131216816
ATWD01000001
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
485134
485048
-
Leu
CAA
[ENA]
¡û
Identical group No.127016 (1 seq.)
>W1710575758
FOZL01000001
Acidobacteriota
Granulicella pectinivorans [FOZL]
4055821
4055735
-
Leu
CAA
[ENA]
¡û
Identical group No.127135 (1 seq.)
>W1711575369
MNIJ01000179
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_58_21 [MNIJ]
8839
8925
+
Leu
CAA
[ENA]
¡û
Identical group No.132515 (1 seq.)
>W1711575690
MNJG01000115
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_56_7 [MNJG]
8963
8877
-
Leu
CAA
[ENA]
¡û
Identical group No.132755 (1 seq.)
>C121011818
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
4047992
4047906
-
Leu
CAA
[Ensembl]
¡û
Identical group No.136791 (1 seq.)
>W1810046978
OKRE01000129
Acidobacteriota
Candidatus Sulfotelmatobacter sp. SbA7 SbA7 Peat soil MAG SbA7 [OKRE]
34238
34324
+
Leu
CAA
[ENA]
¡û
Identical group No.141841 (2 seq.)
>C181193303
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
3982144
3982230
+
Leu
CAA
-
¡û
>W141817048
JQKI01000036
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
58031
58117
+
Leu
CAA
[ENA]
¡û
Identical group No.144856 (1 seq.)
>W1910697472
MEKT01000120
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 [MEKT]
44843
44929
+
Leu
CAA
[ENA]
¡û
Identical group No.145425 (1 seq.)
>W131179177
ARME01000006
Acidobacteriota
Acidobacteriaceae bacterium KBS 89 [ARME]
114624
114538
-
Leu
CAA
[ENA]
¡û
Identical group No.146487 (1 seq.)
>W1910548798
FZOU01000001
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
1260170
1260256
+
Leu
CAA
[ENA]
¡û
Identical group No.148361 (1 seq.)
>W1711573410
MNDC01000124
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
34707
34621
-
Leu
CAA
[ENA]
¡û
Identical group No.152556 (1 seq.)
>W1711502611
MKSV01000011
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
43041
42955
-
Leu
CAA
[ENA]
¡û
Identical group No.152575 (1 seq.)
>W1711575241
MNHT01000122
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_10 [MNHT]
7039
6952
-
Leu
CAA
[ENA]
¡û
Identical group No.152712 (1 seq.)
>W131179142
ARMD01000019
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
473555
473641
+
Leu
CAA
[ENA]
¡û
Identical group No.170973 (1 seq.)
>W141696024
JMFG01000015
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
126121
126036
-
Leu
CAA
[ENA]
¡û
Identical group No.174329 (1 seq.)
>C161037491
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
475183
475098
-
Leu
CAA
-
¡û
Identical group No.176357 (1 seq.)
>C161083739
CP015136
Acidobacteriota
Luteitalea pratensis DSM 100886; HEG_-6_39 [CP015136]
3670073
3669988
-
Leu
CAA
-
¡û
Identical group No.224161 (1 seq.)
>W1910697678
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
2835
2918
+
Leu
CAA
[ENA]
¡û
Identical group No.406729 (1 seq.)
>W1810047214
OMOG01000102
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
26253
26329
+
Leu
CAA
[ENA]
¡û
Identical group No.440538 (1 seq.)
>W1711575001
MNGW01000086
Acidobacteriota
Acidobacteriales bacterium 13_1_40CM_3_55_5 [MNGW]
7188
7264
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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