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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = CAC
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.247823 (2 seq.)
>W1610576113
LAIJ01000010
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
18819
18742
-
Val
CAC
[ENA]
¡û
>W1710694377
LAIJ01000010
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
18819
18742
-
Val
CAC
[ENA]
¡û
Identical group No.319782 (1 seq.)
>W1910697767
MELB01000044
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_10 [MELB]
568
492
-
Val
CAC
[ENA]
¡û
Identical group No.348103 (2 seq.)
>W1910697505
MEKU01000031
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 [MEKU]
1280
1204
-
Val
CAC
[ENA]
¡û
>W1910697854
MELD01000138
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14 [MELD]
6692
6768
+
Val
CAC
[ENA]
¡û
Identical group No.371276 (2 seq.)
>W1910697610
MEKW01000071
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 [MEKW]
6029
6105
+
Val
CAC
[ENA]
¡û
>W1910697921
MELF01000036
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 [MELF]
194747
194671
-
Val
CAC
[ENA]
¡û
Identical group No.382265 (1 seq.)
>W1711573873
MNEA01000054
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_6 [MNEA]
4463
4387
-
Val
CAC
[ENA]
¡û
Identical group No.450998 (1 seq.)
>W1910697419
MEKS01000004
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 [MEKS]
166
90
-
Val
CAC
[ENA]
¡û
Identical group No.572509 (1 seq.)
>W1910697689
MEKY01000122
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
10654
10579
-
Val
CAC
[ENA]
¡û
Identical group No.721695 (1 seq.)
>C000151
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
965656
965730
+
Val
CAC
[Ensembl]
¡û
Identical group No.732316 (1 seq.)
>W1910697299
MEKN01000155
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57 [MEKN]
1103
1029
-
Val
CAC
[ENA]
¡û
Identical group No.744700 (1 seq.)
>W1911748661
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
799520
799446
-
Val
CAC
[ENA]
¡û
Identical group No.751773 (1 seq.)
>C161037485
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
1095042
1094968
-
Val
CAC
-
¡û
Identical group No.752169 (1 seq.)
>W1711575900
MNJR01000059
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
105650
105576
-
Val
CAC
[ENA]
¡û
Identical group No.775370 (1 seq.)
>W1810046950
OKRB01000117
Acidobacteriota
Candidatus Sulfotelmatomonas gaucii SbA5 Peat soil MAG SbA5 [OKRB]
33011
32937
-
Val
CAC
[ENA]
¡û
Identical group No.776400 (1 seq.)
>W131179150
ARMD01000022
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
368209
368135
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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