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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = CAG
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113523 (4 seq.)
>W1711573468
MNDE01000179
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
26073
26159
+
Leu
CAG
[ENA]
¡û
>W1711573886
MNEA01000149
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_6 [MNEA]
17806
17720
-
Leu
CAG
[ENA]
¡û
>W1711573895
MNEB01000071
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_12 [MNEB]
3192
3278
+
Leu
CAG
[ENA]
¡û
>W1711575673
MNJF01000015
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_57_11 [MNJF]
1800
1886
+
Leu
CAG
[ENA]
¡û
Identical group No.126608 (1 seq.)
>W1910697627
MEKX01000038
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
4141
4055
-
Leu
CAG
[ENA]
¡û
Identical group No.127134 (2 seq.)
>W1711575366
MNIJ01000135
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_58_21 [MNIJ]
23043
22957
-
Leu
CAG
[ENA]
¡û
>W1711575867
MNJQ01000144
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_58_11 [MNJQ]
15191
15277
+
Leu
CAG
[ENA]
¡û
Identical group No.132514 (3 seq.)
>W1711574200
MNEY01000075
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_56_16 [MNEY]
3613
3530
-
Leu
CAG
[ENA]
¡û
>W1711574956
MNGU01000015
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_56_11 [MNGU]
4655
4572
-
Leu
CAG
[ENA]
¡û
>W1711575273
MNHX01000081
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_56_11 [MNHX]
4650
4567
-
Leu
CAG
[ENA]
¡û
Identical group No.133020 (1 seq.)
>W131179241
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1688429
1688343
-
Leu
CAG
[ENA]
¡û
Identical group No.134658 (3 seq.)
>W1910697277
MEKM01000061
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
1819
1905
+
Leu
CAG
[ENA]
¡û
>W1910697309
MEKN01000275
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57 [MEKN]
2363
2449
+
Leu
CAG
[ENA]
¡û
>W1910697330
MEKO01000108
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
3623
3537
-
Leu
CAG
[ENA]
¡û
Identical group No.134659 (1 seq.)
>W1910697343
MEKP01000153
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 [MEKP]
1534
1620
+
Leu
CAG
[ENA]
¡û
Identical group No.139440 (1 seq.)
>W1710539063
FNVA01000007
Acidobacteriota
Bryocella elongata [FNVA]
199927
200013
+
Leu
CAG
[ENA]
¡û
Identical group No.139738 (1 seq.)
>W121017813
AGSB01000069
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
233873
233959
+
Leu
CAG
[ENA]
¡û
Identical group No.139810 (1 seq.)
>W141696011
JMFG01000003
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
25440
25354
-
Leu
CAG
[ENA]
¡û
Identical group No.142797 (1 seq.)
>W1910697382
MEKR01000031
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
7252
7166
-
Leu
CAG
[ENA]
¡û
Identical group No.142829 (1 seq.)
>W1911748623
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
1261073
1261159
+
Leu
CAG
[ENA]
¡û
Identical group No.145068 (1 seq.)
>C161037458
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
989133
989219
+
Leu
CAG
-
¡û
Identical group No.145217 (1 seq.)
>W1711575896
MNJR01000051
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
78993
78910
-
Leu
CAG
[ENA]
¡û
Identical group No.148020 (1 seq.)
>C181193300
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
2157075
2157161
+
Leu
CAG
-
¡û
Identical group No.148211 (1 seq.)
>C161083711
CP015136
Acidobacteriota
Luteitalea pratensis DSM 100886; HEG_-6_39 [CP015136]
5681180
5681266
+
Leu
CAG
-
¡û
Identical group No.148325 (1 seq.)
>W1711391135
MEKI01000105
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
21364
21450
+
Leu
CAG
[ENA]
¡û
Identical group No.151183 (1 seq.)
>W1711575264
MNHW01000080
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_56_5 [MNHW]
3637
3554
-
Leu
CAG
[ENA]
¡û
Identical group No.152742 (1 seq.)
>W141730263
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
3174294
3174208
-
Leu
CAG
[ENA]
¡û
Identical group No.169029 (1 seq.)
>W1910697680
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
3098
3183
+
Leu
CAG
[ENA]
¡û
Identical group No.172946 (1 seq.)
>W1810047213
OMOG01000102
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
26161
26246
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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