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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = CCA
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.506757 (2 seq.)
>W1610576093
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
1755737
1755812
+
Trp
CCA
[ENA]
¡û
>W1710694357
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
1755737
1755812
+
Trp
CCA
[ENA]
¡û
Identical group No.536977 (2 seq.)
>W1910697525
MEKU01000086
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 [MEKU]
4817
4742
-
Trp
CCA
[ENA]
¡û
>W1910697833
MELD01000058
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14 [MELD]
5030
4955
-
Trp
CCA
[ENA]
¡û
Identical group No.554515 (1 seq.)
>W131179263
ARMF01000009
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1200517
1200592
+
Trp
CCA
[ENA]
¡û
Identical group No.587623 (1 seq.)
>W1511432666
JUGR01000001
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
1919231
1919306
+
Trp
CCA
[ENA]
¡û
Identical group No.602256 (1 seq.)
>W1910697922
MELF01000037
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 [MELF]
388
463
+
Trp
CCA
[ENA]
¡û
Identical group No.602410 (1 seq.)
>W1911748633
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
2197905
2197980
+
Trp
CCA
[ENA]
¡û
Identical group No.602420 (1 seq.)
>W1810047215
OMOG01000102
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
26338
26413
+
Trp
CCA
[ENA]
¡û
Identical group No.612678 (1 seq.)
>C161037467
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
3238257
3238332
+
Trp
CCA
-
¡û
Identical group No.612890 (2 seq.)
>W1610083308
CBXV010000001
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
658
733
+
Trp
CCA
[ENA]
¡û
>W1710088325
CBXV010000001
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
658
733
+
Trp
CCA
[ENA]
¡û
Identical group No.714957 (1 seq.)
>W131179233
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1170623
1170697
+
Trp
CCA
[ENA]
¡û
Identical group No.726407 (1 seq.)
>W1910697690
MEKY01000129
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
9022
9096
+
Trp
CCA
[ENA]
¡û
Identical group No.755878 (1 seq.)
>W1750069398
MNJR01000027
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
132521
132595
+
Trp
CCA
[ENA]
¡û
Identical group No.835836 (1 seq.)
>W141730257
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
3045431
3045504
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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