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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = CCC
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.552249 (3 seq.)
>W1711574619
MNFT01000063
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_69_4 [MNFT]
16950
16875
-
Gly
CCC
[ENA]
¡û
>W1711575210
MNHS01000090
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_5 [MNHS]
6595
6670
+
Gly
CCC
[ENA]
¡û
>W1711576079
MNKK01000005
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_7 [MNKK]
10517
10442
-
Gly
CCC
[ENA]
¡û
Identical group No.628748 (1 seq.)
>W1711391132
MEKI01000075
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
19287
19212
-
Gly
CCC
[ENA]
¡û
Identical group No.647814 (1 seq.)
>W1711391201
MEKL01000078
Acidobacteriota
Acidobacteria bacterium RBG_16_70_10 [MEKL]
6628
6703
+
Gly
CCC
[ENA]
¡û
Identical group No.647969 (1 seq.)
>W1711575237
MNHT01000094
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_10 [MNHT]
2952
3027
+
Gly
CCC
[ENA]
¡û
Identical group No.671677 (1 seq.)
>W1810587161
QFFY01000005
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
474603
474677
+
Gly
CCC
[ENA]
¡û
Identical group No.688233 (1 seq.)
>W131237255
AUNQ01000133
Acidobacteriota
Acidobacteria bacterium JGI 0001001-H03 [AUNQ]
995
921
-
Gly
CCC
[ENA]
¡û
Identical group No.713105 (2 seq.)
>W1710893871
LNFE01000172
Acidobacteriota
Acidobacteria bacterium Ga0077553 [LNFE]
315
241
-
Gly
CCC
[ENA]
¡û
>W1610754137
LNFE01000172
Acidobacteriota
Acidobacteria bacterium Ga0077553 [LNFE]
315
241
-
Gly
CCC
[ENA]
¡û
Identical group No.727587 (1 seq.)
>W1711391174
MEKJ01000246
Acidobacteriota
Acidobacteria bacterium RBG_16_64_8 [MEKJ]
38869
38795
-
Gly
CCC
[ENA]
¡û
Identical group No.751859 (2 seq.)
>W1610083309
CBXV010000001
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
289715
289789
+
Gly
CCC
[ENA]
¡û
>W1710088326
CBXV010000001
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
289715
289789
+
Gly
CCC
[ENA]
¡û
Identical group No.752168 (1 seq.)
>W1711575874
MNJR01000023
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
66148
66075
-
Gly
CCC
[ENA]
¡û
Identical group No.775369 (1 seq.)
>W1810046928
OKRB01000024
Acidobacteriota
Candidatus Sulfotelmatomonas gaucii SbA5 Peat soil MAG SbA5 [OKRB]
73602
73528
-
Gly
CCC
[ENA]
¡û
Identical group No.776450 (1 seq.)
>W141730251
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
2458039
2458113
+
Gly
CCC
[ENA]
¡û
Identical group No.812562 (2 seq.)
>W1930012623
MEKS01000004
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 [MEKS]
5284
5212
-
Gly
CCC
[ENA]
¡û
>W1930012640
MELA01000037
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11 [MELA]
16144
16216
+
Gly
CCC
[ENA]
¡û
Identical group No.823956 (1 seq.)
>W1930012624
MEKT01000016
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 [MEKT]
39181
39254
+
Gly
CCC
[ENA]
¡û
Identical group No.835575 (1 seq.)
>W1730031517
MNFW01000339
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_58_4 [MNFW]
20155
20228
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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