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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = CCG
HIT:
30 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254762 (4 seq.)
>W1711574217
MNEY01000166
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_56_16 [MNEY]
1977
1903
-
Arg
CCG
[ENA]
¡û
>W1711574963
MNGU01000062
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_56_11 [MNGU]
15281
15355
+
Arg
CCG
[ENA]
¡û
>W1711575271
MNHX01000034
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_56_11 [MNHX]
15166
15240
+
Arg
CCG
[ENA]
¡û
>W1711576161
MNKP01000171
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_55_15 [MNKP]
11086
11160
+
Arg
CCG
[ENA]
¡û
Identical group No.255017 (1 seq.)
>W131179237
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1171491
1171568
+
Arg
CCG
[ENA]
¡û
Identical group No.257923 (1 seq.)
>W1930012634
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
2512
2589
+
Arg
CCG
[ENA]
¡û
Identical group No.260162 (1 seq.)
>W141696040
JMFG01000024
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
21023
21100
+
Arg
CCG
[ENA]
¡û
Identical group No.266512 (1 seq.)
>W1711391141
MEKI01000137
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
17769
17692
-
Arg
CCG
[ENA]
¡û
Identical group No.269680 (1 seq.)
>W141730258
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
3828241
3828318
+
Arg
CCG
[ENA]
¡û
Identical group No.277161 (3 seq.)
>W1711573451
MNDE01000088
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
1379
1303
-
Arg
CCG
[ENA]
¡û
>W1711573876
MNEA01000099
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_6 [MNEA]
11529
11605
+
Arg
CCG
[ENA]
¡û
>W1711575680
MNJF01000119
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_57_11 [MNJF]
8231
8307
+
Arg
CCG
[ENA]
¡û
Identical group No.299057 (1 seq.)
>W1810047104
OMOD01000168
Acidobacteriota
Candidatus Sulfotelmatobacter kueseliae SbA1 Peat soil MAG SbA1 [OMOD]
21717
21641
-
Arg
CCG
[ENA]
¡û
Identical group No.302397 (3 seq.)
>C11123000
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
3792012
3792088
+
Arg
CCG
[Ensembl]
¡û
>W11137272
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
3848295
3848371
+
Arg
CCG
[ENA]
¡û
>W1710534882
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
3491281
3491205
-
Arg
CCG
[ENA]
¡û
Identical group No.336556 (3 seq.)
>W1910697366
MEKQ01000050
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20 [MEKQ]
2886
2810
-
Arg
CCG
[ENA]
¡û
>W1910697398
MEKR01000130
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
45563
45487
-
Arg
CCG
[ENA]
¡û
>W1910697721
MEKZ01000375
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
3110
3034
-
Arg
CCG
[ENA]
¡û
Identical group No.336565 (1 seq.)
>W1910697638
MEKX01000108
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
5901
5977
+
Arg
CCG
[ENA]
¡û
Identical group No.340752 (1 seq.)
>W131221837
AUAU01000016
Acidobacteriota
Geothrix fermentans DSM 14018 [AUAU]
89410
89334
-
Arg
CCG
[ENA]
¡û
Identical group No.340753 (1 seq.)
>W131221838
AUAU01000016
Acidobacteriota
Geothrix fermentans DSM 14018 [AUAU]
77378
77302
-
Arg
CCG
[ENA]
¡û
Identical group No.362060 (2 seq.)
>W1711575206
MNHS01000051
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_5 [MNHS]
11018
11094
+
Arg
CCG
[ENA]
¡û
>W1711576090
MNKK01000073
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_7 [MNKK]
5844
5920
+
Arg
CCG
[ENA]
¡û
Identical group No.362984 (1 seq.)
>C121011811
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
4379385
4379461
+
Arg
CCG
[Ensembl]
¡û
Identical group No.364292 (1 seq.)
>W131179273
ARMF01000012
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
169747
169823
+
Arg
CCG
[ENA]
¡û
Identical group No.373250 (2 seq.)
>W1711574643
MNFV01000081
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_61_5 [MNFV]
1940
1864
-
Arg
CCG
[ENA]
¡û
>W1711575251
MNHV01000029
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_60_7 [MNHV]
4040
3964
-
Arg
CCG
[ENA]
¡û
Identical group No.383369 (2 seq.)
>C024907
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
2389808
2389884
+
Arg
CCG
[Ensembl]
¡û
>W09102623
AAIA01000062
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
16073
16149
+
Arg
CCG
[ENA]
¡û
Identical group No.392121 (1 seq.)
>W1710539067
FNVA01000009
Acidobacteriota
Bryocella elongata [FNVA]
144367
144443
+
Arg
CCG
[ENA]
¡û
Identical group No.393176 (1 seq.)
>W121017816
AGSB01000070
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
360641
360717
+
Arg
CCG
[ENA]
¡û
Identical group No.406717 (1 seq.)
>W1911748662
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
761449
761373
-
Arg
CCG
[ENA]
¡û
Identical group No.406925 (1 seq.)
>W1810915047
QVQT01000004
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
117013
116937
-
Arg
CCG
[ENA]
¡û
Identical group No.415683 (1 seq.)
>C161037479
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
1405682
1405606
-
Arg
CCG
-
¡û
Identical group No.421900 (1 seq.)
>W1910548821
FZOU01000004
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
121963
122039
+
Arg
CCG
[ENA]
¡û
Identical group No.428397 (1 seq.)
>C181193306
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
4783779
4783855
+
Arg
CCG
-
¡û
Identical group No.429195 (1 seq.)
>C161083722
CP015136
Acidobacteriota
Luteitalea pratensis DSM 100886; HEG_-6_39 [CP015136]
6073587
6073511
-
Arg
CCG
-
¡û
Identical group No.429856 (1 seq.)
>W1711574609
MNFT01000015
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_69_4 [MNFT]
1075
999
-
Arg
CCG
[ENA]
¡û
Identical group No.446636 (1 seq.)
>W1711391196
MEKL01000052
Acidobacteriota
Acidobacteria bacterium RBG_16_70_10 [MEKL]
18197
18121
-
Arg
CCG
[ENA]
¡û
Identical group No.602425 (1 seq.)
>W1810047242
OMOG01000368
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
6103
6178
+
Arg
CCG
[ENA]
¡û
Identical group No.613444 (1 seq.)
>W1711575899
MNJR01000059
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
67969
68044
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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