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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = CCT
HIT:
54 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272025 (1 seq.)
>W143016608
JMFG01000008
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
81683
81605
-
Arg
CCT
[ENA]
¡û
Identical group No.286580 (1 seq.)
>W2110094221
CAJCIV010000082
Acidobacteriota
Acidobacteriaceae bacterium [CAJCIV]
6292
6367
+
Arg
CCT
[ENA]
¡û
Identical group No.287924 (4 seq.)
>W1910697281
MEKM01000100
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
5606
5681
+
Arg
CCT
[ENA]
¡û
>W1910697331
MEKO01000111
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
173
247
+
Arg
CCT
[ENA]
¡û
>W2010830706
MEKM01000100
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
5606
5681
+
Arg
CCT
[ENA]
¡û
>W2010830756
MEKO01000111
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
173
247
+
Arg
CCT
[ENA]
¡û
Identical group No.294718 (1 seq.)
>W1711391114
MEKI01000003
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
2851
2774
-
Arg
CCT
[ENA]
¡û
Identical group No.300529 (1 seq.)
>W2110094165
CAJCIT010000064
Acidobacteriota
Acidobacteriaceae bacterium [CAJCIT]
39902
39979
+
Arg
CCT
[ENA]
¡û
Identical group No.309240 (1 seq.)
>W1810047228
OMOG01000223
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
924
848
-
Arg
CCT
[ENA]
¡û
Identical group No.325579 (1 seq.)
>W2110094105
CAJCIS010000032
Acidobacteriota
Acidobacteria bacterium [CAJCIS]
5169
5093
-
Arg
CCT
[ENA]
¡û
Identical group No.332969 (4 seq.)
>W1711573445
MNDE01000051
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
14631
14555
-
Arg
CCT
[ENA]
¡û
>W1711573889
MNEA01000165
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_6 [MNEA]
3487
3411
-
Arg
CCT
[ENA]
¡û
>W1711574701
MNFX01000094
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_57_6 [MNFX]
8818
8742
-
Arg
CCT
[ENA]
¡û
>W1711575678
MNJF01000117
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_57_11 [MNJF]
114
190
+
Arg
CCT
[ENA]
¡û
Identical group No.333040 (3 seq.)
>W1711574618
MNFT01000032
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_69_4 [MNFT]
10426
10502
+
Arg
CCT
[ENA]
¡û
>W1711575202
MNHS01000027
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_5 [MNHS]
179
255
+
Arg
CCT
[ENA]
¡û
>W1711576086
MNKK01000057
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_7 [MNKK]
14676
14752
+
Arg
CCT
[ENA]
¡û
Identical group No.333048 (1 seq.)
>W1711575239
MNHT01000111
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_10 [MNHT]
11144
11068
-
Arg
CCT
[ENA]
¡û
Identical group No.344492 (2 seq.)
>W1910697338
MEKP01000086
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 [MEKP]
4879
4803
-
Arg
CCT
[ENA]
¡û
>W2010830763
MEKP01000086
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 [MEKP]
4879
4803
-
Arg
CCT
[ENA]
¡û
Identical group No.344513 (4 seq.)
>W1910697576
MEKV01000123
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
16237
16163
-
Arg
CCT
[ENA]
¡û
>W1910697791
MELC01000039
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
16271
16197
-
Arg
CCT
[ENA]
¡û
>W2010831001
MEKV01000123
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
16237
16163
-
Arg
CCT
[ENA]
¡û
>W2010831216
MELC01000039
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
16271
16197
-
Arg
CCT
[ENA]
¡û
Identical group No.346563 (1 seq.)
>W131179235
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1171327
1171403
+
Arg
CCT
[ENA]
¡û
Identical group No.394719 (2 seq.)
>W1911748664
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
15443
15367
-
Arg
CCT
[ENA]
¡û
>W2011317593
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
15443
15367
-
Arg
CCT
[ENA]
¡û
Identical group No.394825 (1 seq.)
>W1810047094
OMOD01000127
Acidobacteriota
Candidatus Sulfotelmatobacter kueseliae SbA1 Peat soil MAG SbA1 [OMOD]
19621
19545
-
Arg
CCT
[ENA]
¡û
Identical group No.401318 (1 seq.)
>W1711384755
MEDJ01000001
Acidobacteriota
Acidobacteria bacterium SCN 69-37 [MEDJ]
64719
64795
+
Arg
CCT
[ENA]
¡û
Identical group No.402484 (2 seq.)
>W1711574649
MNFV01000122
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_61_5 [MNFV]
1324
1400
+
Arg
CCT
[ENA]
¡û
>W1711575253
MNHV01000043
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_60_7 [MNHV]
352
428
+
Arg
CCT
[ENA]
¡û
Identical group No.408460 (2 seq.)
>W2010781558
LMUM01000015
Acidobacteriota
Acidobacterium sp. S8 [LMUM]
230602
230526
-
Arg
CCT
[ENA]
¡û
>W2011634480
SMGK01000007
Acidobacteriota
Acidipila rosea DSM 103428 [SMGK]
135826
135902
+
Arg
CCT
[ENA]
¡û
Identical group No.428489 (2 seq.)
>W1630003661
CBXV010000005
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
73035
72959
-
Arg
CCT
[ENA]
¡û
>W1730003038
CBXV010000005
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
73035
72959
-
Arg
CCT
[ENA]
¡û
Identical group No.444425 (1 seq.)
>W2010363170
CADDZE010000013
Acidobacteriota
Acidobacteria bacterium [CADDZE]
49887
49962
+
Arg
CCT
[ENA]
¡û
Identical group No.445889 (1 seq.)
>W2110093316
CAJCHQ010000184
Acidobacteriota
Bryobacterales bacterium [CAJCHQ]
6099
6023
-
Arg
CCT
[ENA]
¡û
Identical group No.448360 (1 seq.)
>W1711573423
MNDC01000187
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
186
110
-
Arg
CCT
[ENA]
¡û
Identical group No.450065 (1 seq.)
>C211000381
AP017470
Acidobacteriota
Thermotomaculum hydrothermale AC55 [AP017470]
111179
111103
-
Arg
CCT
-
¡û
Identical group No.450222 (2 seq.)
>C09100243
CP001472
Acidobacteriota
Acidobacterium capsulatum ATCC 51196 [CP001472]
669948
669872
-
Arg
CCT
[Ensembl]
¡û
>C211132777
CP060394
Acidobacteriota
Acidobacterium sp. 4Y35 [CP060394]
852984
853060
+
Arg
CCT
-
¡û
Identical group No.450272 (1 seq.)
>C211181167
CP063849
Acidobacteriota
Paludibaculum fermentans P105 [CP063849]
6027882
6027806
-
Arg
CCT
-
¡û
Identical group No.450835 (1 seq.)
>C231331400
CP093313
Acidobacteriota
Occallatibacter riparius DSM 25168 [CP093313]
3731893
3731969
+
Arg
CCT
-
¡û
Identical group No.452773 (1 seq.)
>C213002803
CP065000
Acidobacteriota
Acidobacteria bacterium [CP065000]
2920975
2921051
+
Arg
CCT
-
¡û
Identical group No.452775 (1 seq.)
>C213002806
CP065003
Acidobacteriota
Acidobacteria bacterium [CP065003]
1438400
1438324
-
Arg
CCT
-
¡û
Identical group No.453896 (2 seq.)
>W131221836
AUAU01000015
Acidobacteriota
Geothrix fermentans DSM 14018 [AUAU]
12815
12739
-
Arg
CCT
[ENA]
¡û
>W2310020841
BSDC01000003
Acidobacteriota
Geothrix edaphica Red802 [BSDC]
228129
228053
-
Arg
CCT
[ENA]
¡û
Identical group No.453988 (3 seq.)
>W131179137
ARMD01000016
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
16309
16233
-
Arg
CCT
[ENA]
¡û
>W1610576074
LAIJ01000001
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
407484
407560
+
Arg
CCT
[ENA]
¡û
>W1710694338
LAIJ01000001
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
407484
407560
+
Arg
CCT
[ENA]
¡û
Identical group No.461685 (1 seq.)
>W2011961591
VANK01000001
Acidobacteriota
Acidobacteria bacterium AB60 [VANK]
194934
195010
+
Arg
CCT
[ENA]
¡û
Identical group No.471525 (1 seq.)
>W141564269
JIAQ01000001
Acidobacteriota
Acidobacteriaceae bacterium URHE0068 [JIAQ]
69501
69577
+
Arg
CCT
[ENA]
¡û
Identical group No.481479 (1 seq.)
>W2110094188
CAJCIT010000180
Acidobacteriota
Acidobacteriaceae bacterium [CAJCIT]
6152
6076
-
Arg
CCT
[ENA]
¡û
Identical group No.482006 (1 seq.)
>W2110520584
JAFREP010000044
Acidobacteriota
Acanthopleuribacter pedis KCTC 12899 [JAFREP]
46534
46608
+
Arg
CCT
[ENA]
¡û
Identical group No.483252 (1 seq.)
>W1711574667
MNFW01000094
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_58_4 [MNFW]
12857
12933
+
Arg
CCT
[ENA]
¡û
Identical group No.483253 (1 seq.)
>W1711574686
MNFW01000316
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_58_4 [MNFW]
14383
14459
+
Arg
CCT
[ENA]
¡û
Identical group No.483256 (1 seq.)
>W1711574999
MNGW01000026
Acidobacteriota
Acidobacteriales bacterium 13_1_40CM_3_55_5 [MNGW]
7008
7084
+
Arg
CCT
[ENA]
¡û
Identical group No.484849 (1 seq.)
>C211198205
CP065005
Acidobacteriota
Acidobacteria bacterium [CP065005]
2819869
2819796
-
Arg
CCT
-
¡û
Identical group No.484917 (1 seq.)
>C211295889
CP071793
Acidobacteriota
Acanthopleuribacteraceae bacterium M133 [CP071793]
6022371
6022295
-
Arg
CCT
-
¡û
Identical group No.486042 (1 seq.)
>C161037457
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
767822
767898
+
Arg
CCT
-
¡û
Identical group No.486596 (1 seq.)
>C000188
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
2275787
2275711
-
Arg
CCT
[Ensembl]
¡û
Identical group No.487125 (2 seq.)
>W1910697652
MEKY01000026
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
1499
1423
-
Arg
CCT
[ENA]
¡û
>W2010831077
MEKY01000026
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
1499
1423
-
Arg
CCT
[ENA]
¡û
Identical group No.487132 (2 seq.)
>W1910697710
MEKZ01000192
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
6615
6691
+
Arg
CCT
[ENA]
¡û
>W2010831135
MEKZ01000192
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
6615
6691
+
Arg
CCT
[ENA]
¡û
Identical group No.608643 (1 seq.)
>W2130007078
CAJCHX010000649
Acidobacteriota
Acidobacteriaceae bacterium [CAJCHX]
3626
3553
-
Arg
CCT
[ENA]
¡û
Identical group No.619031 (1 seq.)
>C241010195
AP027079
Acidobacteriota
Geothrix oryzae Red222 [AP027079]
903282
903207
-
Arg
CCT
-
¡û
Identical group No.647043 (1 seq.)
>W141730247
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
1687445
1687520
+
Arg
CCT
[ENA]
¡û
Identical group No.661673 (1 seq.)
>W2010363206
CADDZE010000154
Acidobacteriota
Acidobacteria bacterium [CADDZE]
176
251
+
Arg
CCT
[ENA]
¡û
Identical group No.705485 (1 seq.)
>W121017799
AGSB01000066
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
16350
16425
+
Arg
CCT
[ENA]
¡û
Identical group No.707690 (1 seq.)
>C241010232
AP027080
Acidobacteriota
Mesoterricola silvestris W79 [AP027080]
4068750
4068675
-
Arg
CCT
-
¡û
Identical group No.707693 (1 seq.)
>C241010281
AP027081
Acidobacteriota
Mesoterricola sediminis W786 [AP027081]
3573699
3573624
-
Arg
CCT
-
¡û
Identical group No.709324 (2 seq.)
>W1910697491
MEKT01000237
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 [MEKT]
14444
14519
+
Arg
CCT
[ENA]
¡û
>W2010830916
MEKT01000237
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 [MEKT]
14444
14519
+
Arg
CCT
[ENA]
¡û
Identical group No.709329 (2 seq.)
>W1910697674
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
2210
2285
+
Arg
CCT
[ENA]
¡û
>W2010831099
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
2210
2285
+
Arg
CCT
[ENA]
¡û
Identical group No.853095 (1 seq.)
>W2110093273
CAJCHP010000092
Acidobacteriota
Acidobacteriaceae bacterium [CAJCHP]
1812
1738
-
Arg
CCT
[ENA]
¡û
Identical group No.853454 (1 seq.)
>W2110520578
JAFREP010000043
Acidobacteriota
Acanthopleuribacter pedis KCTC 12899 [JAFREP]
42467
42538
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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