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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = CCT
HIT:
32 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238534 (1 seq.)
>W143016608
JMFG01000008
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
81683
81605
-
Arg
CCT
[ENA]
¡û
Identical group No.256128 (2 seq.)
>W1910697281
MEKM01000100
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
5606
5681
+
Arg
CCT
[ENA]
¡û
>W1910697331
MEKO01000111
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
173
247
+
Arg
CCT
[ENA]
¡û
Identical group No.266511 (1 seq.)
>W1711391114
MEKI01000003
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
2851
2774
-
Arg
CCT
[ENA]
¡û
Identical group No.277158 (4 seq.)
>W1711573445
MNDE01000051
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
14631
14555
-
Arg
CCT
[ENA]
¡û
>W1711573889
MNEA01000165
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_6 [MNEA]
3487
3411
-
Arg
CCT
[ENA]
¡û
>W1711574701
MNFX01000094
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_57_6 [MNFX]
8818
8742
-
Arg
CCT
[ENA]
¡û
>W1711575678
MNJF01000117
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_57_11 [MNJF]
114
190
+
Arg
CCT
[ENA]
¡û
Identical group No.299055 (1 seq.)
>W1810047094
OMOD01000127
Acidobacteriota
Candidatus Sulfotelmatobacter kueseliae SbA1 Peat soil MAG SbA1 [OMOD]
19621
19545
-
Arg
CCT
[ENA]
¡û
Identical group No.320933 (3 seq.)
>W131179137
ARMD01000016
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
16309
16233
-
Arg
CCT
[ENA]
¡û
>W1610576074
LAIJ01000001
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
407484
407560
+
Arg
CCT
[ENA]
¡û
>W1710694338
LAIJ01000001
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
407484
407560
+
Arg
CCT
[ENA]
¡û
Identical group No.340751 (1 seq.)
>W131221836
AUAU01000015
Acidobacteriota
Geothrix fermentans DSM 14018 [AUAU]
12815
12739
-
Arg
CCT
[ENA]
¡û
Identical group No.348112 (2 seq.)
>W1910697576
MEKV01000123
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
16237
16163
-
Arg
CCT
[ENA]
¡û
>W1910697791
MELC01000039
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
16271
16197
-
Arg
CCT
[ENA]
¡û
Identical group No.362058 (3 seq.)
>W1711574618
MNFT01000032
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_69_4 [MNFT]
10426
10502
+
Arg
CCT
[ENA]
¡û
>W1711575202
MNHS01000027
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_5 [MNHS]
179
255
+
Arg
CCT
[ENA]
¡û
>W1711576086
MNKK01000057
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_7 [MNKK]
14676
14752
+
Arg
CCT
[ENA]
¡û
Identical group No.364285 (1 seq.)
>W131179235
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1171327
1171403
+
Arg
CCT
[ENA]
¡û
Identical group No.371272 (1 seq.)
>W1910697338
MEKP01000086
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 [MEKP]
4879
4803
-
Arg
CCT
[ENA]
¡û
Identical group No.373251 (2 seq.)
>W1711574649
MNFV01000122
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_61_5 [MNFV]
1324
1400
+
Arg
CCT
[ENA]
¡û
>W1711575253
MNHV01000043
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_60_7 [MNHV]
352
428
+
Arg
CCT
[ENA]
¡û
Identical group No.374233 (1 seq.)
>C000188
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
2275787
2275711
-
Arg
CCT
[Ensembl]
¡û
Identical group No.380289 (1 seq.)
>W1910697652
MEKY01000026
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
1499
1423
-
Arg
CCT
[ENA]
¡û
Identical group No.388771 (1 seq.)
>W1910697710
MEKZ01000192
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
6615
6691
+
Arg
CCT
[ENA]
¡û
Identical group No.393137 (1 seq.)
>C09100243
CP001472
Acidobacteriota
Acidobacterium capsulatum ATCC 51196 [CP001472]
669948
669872
-
Arg
CCT
[Ensembl]
¡û
Identical group No.406719 (1 seq.)
>W1911748664
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
15443
15367
-
Arg
CCT
[ENA]
¡û
Identical group No.406735 (1 seq.)
>W1810047228
OMOG01000223
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
924
848
-
Arg
CCT
[ENA]
¡û
Identical group No.406922 (3 seq.)
>C181193309
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
5392624
5392700
+
Arg
CCT
-
¡û
>W1810915027
QVQT01000001
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
235260
235184
-
Arg
CCT
[ENA]
¡û
>W1511591143
LBHJ01000020
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
546729
546653
-
Arg
CCT
[ENA]
¡û
Identical group No.408988 (1 seq.)
>W141564269
JIAQ01000001
Acidobacteriota
Acidobacteriaceae bacterium URHE0068 [JIAQ]
69501
69577
+
Arg
CCT
[ENA]
¡û
Identical group No.415679 (1 seq.)
>C161037457
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
767822
767898
+
Arg
CCT
-
¡û
Identical group No.415806 (2 seq.)
>W1630003661
CBXV010000005
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
73035
72959
-
Arg
CCT
[ENA]
¡û
>W1730003038
CBXV010000005
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
73035
72959
-
Arg
CCT
[ENA]
¡û
Identical group No.429848 (1 seq.)
>W1711573423
MNDC01000187
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
186
110
-
Arg
CCT
[ENA]
¡û
Identical group No.440537 (1 seq.)
>W1711574999
MNGW01000026
Acidobacteriota
Acidobacteriales bacterium 13_1_40CM_3_55_5 [MNGW]
7008
7084
+
Arg
CCT
[ENA]
¡û
Identical group No.446630 (1 seq.)
>W1711384755
MEDJ01000001
Acidobacteriota
Acidobacteria bacterium SCN 69-37 [MEDJ]
64719
64795
+
Arg
CCT
[ENA]
¡û
Identical group No.446752 (1 seq.)
>W1711574667
MNFW01000094
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_58_4 [MNFW]
12857
12933
+
Arg
CCT
[ENA]
¡û
Identical group No.446753 (1 seq.)
>W1711574686
MNFW01000316
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_58_4 [MNFW]
14383
14459
+
Arg
CCT
[ENA]
¡û
Identical group No.446756 (1 seq.)
>W1711575239
MNHT01000111
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_10 [MNHT]
11144
11068
-
Arg
CCT
[ENA]
¡û
Identical group No.572506 (1 seq.)
>W1910697674
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
2210
2285
+
Arg
CCT
[ENA]
¡û
Identical group No.587016 (1 seq.)
>W121017799
AGSB01000066
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
16350
16425
+
Arg
CCT
[ENA]
¡û
Identical group No.611700 (1 seq.)
>W1910697491
MEKT01000237
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 [MEKT]
14444
14519
+
Arg
CCT
[ENA]
¡û
Identical group No.648701 (1 seq.)
>W141730247
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
1687445
1687520
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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