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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = CGA
HIT:
42 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10077 (2 seq.)
>W1711575224
MNHS01000195
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_5 [MNHS]
4013
4106
+
Ser
CGA
[ENA]
¡û
>W1711576094
MNKK01000090
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_7 [MNKK]
2625
2532
-
Ser
CGA
[ENA]
¡û
Identical group No.21374 (1 seq.)
>W1810587165
QFFY01000006
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
435353
435262
-
Ser
CGA
[ENA]
¡û
Identical group No.21512 (3 seq.)
>C121011820
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
2916364
2916273
-
Ser
CGA
[Ensembl]
¡û
>C121011821
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
2455841
2455750
-
Ser
CGA
[Ensembl]
¡û
>W1710534893
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
346861
346770
-
Ser
CGA
[ENA]
¡û
Identical group No.22711 (3 seq.)
>W10119459
ADVX01000002
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
92416
92507
+
Ser
CGA
[ENA]
¡û
>W11125725
ADVX01000002
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
92416
92507
+
Ser
CGA
[ENA]
¡û
>C121006502
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
2468437
2468528
+
Ser
CGA
[Ensembl]
¡û
Identical group No.22750 (1 seq.)
>W131216806
ATWD01000001
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
4382845
4382754
-
Ser
CGA
[ENA]
¡û
Identical group No.23523 (1 seq.)
>W1710575765
FOZL01000001
Acidobacteriota
Granulicella pectinivorans [FOZL]
2215392
2215301
-
Ser
CGA
[ENA]
¡û
Identical group No.25552 (2 seq.)
>C11123023
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
2133890
2133799
-
Ser
CGA
[Ensembl]
¡û
>W11137295
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
2202892
2202801
-
Ser
CGA
[ENA]
¡û
Identical group No.26687 (1 seq.)
>C09100248
CP001472
Acidobacteriota
Acidobacterium capsulatum ATCC 51196 [CP001472]
62479
62388
-
Ser
CGA
[Ensembl]
¡û
Identical group No.26701 (1 seq.)
>W141696004
JMFG01000002
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
159859
159950
+
Ser
CGA
[ENA]
¡û
Identical group No.26715 (1 seq.)
>W1511432684
JUGR01000001
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
1138340
1138249
-
Ser
CGA
[ENA]
¡û
Identical group No.27545 (1 seq.)
>W1911748639
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
3313134
3313225
+
Ser
CGA
[ENA]
¡û
Identical group No.28452 (1 seq.)
>W1910548822
FZOU01000004
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
466961
466870
-
Ser
CGA
[ENA]
¡û
Identical group No.28894 (1 seq.)
>C181193302
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
3868785
3868876
+
Ser
CGA
-
¡û
Identical group No.28988 (1 seq.)
>W1711391117
MEKI01000018
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
14764
14673
-
Ser
CGA
[ENA]
¡û
Identical group No.29725 (1 seq.)
>W141564055
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
3253239
3253148
-
Ser
CGA
[ENA]
¡û
Identical group No.30003 (1 seq.)
>W1711502591
MKSV01000007
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
1206520
1206429
-
Ser
CGA
[ENA]
¡û
Identical group No.30035 (1 seq.)
>W131179141
ARMD01000019
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
343397
343488
+
Ser
CGA
[ENA]
¡û
Identical group No.30047 (1 seq.)
>W1511591112
LBHJ01000003
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
971485
971394
-
Ser
CGA
[ENA]
¡û
Identical group No.39696 (2 seq.)
>W1910697423
MEKS01000020
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 [MEKS]
53516
53606
+
Ser
CGA
[ENA]
¡û
>W1910697736
MELA01000079
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11 [MELA]
4194
4104
-
Ser
CGA
[ENA]
¡û
Identical group No.42715 (1 seq.)
>W1711575880
MNJR01000027
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
132610
132697
+
Ser
CGA
[ENA]
¡û
Identical group No.43825 (1 seq.)
>C161083704
CP015136
Acidobacteriota
Luteitalea pratensis DSM 100886; HEG_-6_39 [CP015136]
962977
963067
+
Ser
CGA
-
¡û
Identical group No.46498 (3 seq.)
>W1711573448
MNDE01000073
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
14807
14718
-
Ser
CGA
[ENA]
¡û
>W1711574695
MNFX01000025
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_57_6 [MNFX]
10430
10341
-
Ser
CGA
[ENA]
¡û
>W1711574969
MNGU01000081
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_56_11 [MNGU]
4764
4675
-
Ser
CGA
[ENA]
¡û
Identical group No.52705 (2 seq.)
>W1610576082
LAIJ01000007
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
91702
91791
+
Ser
CGA
[ENA]
¡û
>W1710694346
LAIJ01000007
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
91702
91791
+
Ser
CGA
[ENA]
¡û
Identical group No.54877 (1 seq.)
>W1910697641
MEKX01000114
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
2559
2470
-
Ser
CGA
[ENA]
¡û
Identical group No.55500 (1 seq.)
>W131221826
AUAU01000009
Acidobacteriota
Geothrix fermentans DSM 14018 [AUAU]
138395
138484
+
Ser
CGA
[ENA]
¡û
Identical group No.59014 (1 seq.)
>W131179221
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1134957
1135046
+
Ser
CGA
[ENA]
¡û
Identical group No.59943 (3 seq.)
>W1910697270
MEKM01000026
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
4553
4464
-
Ser
CGA
[ENA]
¡û
>W1910697303
MEKN01000229
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57 [MEKN]
2071
1982
-
Ser
CGA
[ENA]
¡û
>W1910697319
MEKO01000019
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
4531
4442
-
Ser
CGA
[ENA]
¡û
Identical group No.59944 (1 seq.)
>W1910697346
MEKP01000219
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 [MEKP]
3773
3684
-
Ser
CGA
[ENA]
¡û
Identical group No.59947 (2 seq.)
>W1910697612
MEKW01000073
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 [MEKW]
2273
2184
-
Ser
CGA
[ENA]
¡û
>W1910697904
MELF01000015
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 [MELF]
2155
2066
-
Ser
CGA
[ENA]
¡û
Identical group No.60383 (1 seq.)
>C000185
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
2379997
2379908
-
Ser
CGA
[Ensembl]
¡û
Identical group No.61527 (1 seq.)
>W1711391161
MEKJ01000098
Acidobacteriota
Acidobacteria bacterium RBG_16_64_8 [MEKJ]
232
143
-
Ser
CGA
[ENA]
¡û
Identical group No.61744 (2 seq.)
>C024929
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
6814849
6814760
-
Ser
CGA
[Ensembl]
¡û
>W09102632
AAIA01000083
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
27764
27853
+
Ser
CGA
[ENA]
¡û
Identical group No.62573 (1 seq.)
>W1910697700
MEKZ01000035
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
5408
5319
-
Ser
CGA
[ENA]
¡û
Identical group No.63148 (2 seq.)
>W1711081980
LSTK01000012
Acidobacteriota
Acidobacteria bacterium SCGC AG-212-P17 [LSTK]
14868
14957
+
Ser
CGA
[ENA]
¡û
>W1610920815
LSTK01000012
Acidobacteriota
Acidobacteria bacterium SCGC AG-212-P17 [LSTK]
14868
14957
+
Ser
CGA
[ENA]
¡û
Identical group No.63403 (1 seq.)
>W121017802
AGSB01000066
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
171157
171068
-
Ser
CGA
[ENA]
¡û
Identical group No.65335 (1 seq.)
>W1810047009
OKRF01000176
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA3 SbA3 Peat soil MAG SbA3 [OKRF]
4175
4086
-
Ser
CGA
[ENA]
¡û
Identical group No.65692 (1 seq.)
>W141564271
JIAQ01000002
Acidobacteriota
Acidobacteriaceae bacterium URHE0068 [JIAQ]
59314
59403
+
Ser
CGA
[ENA]
¡û
Identical group No.66851 (2 seq.)
>W1610083344
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
629063
628974
-
Ser
CGA
[ENA]
¡û
>W1710088361
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
629063
628974
-
Ser
CGA
[ENA]
¡û
Identical group No.68933 (1 seq.)
>W1711573907
MNEC01000066
Acidobacteriota
Acidobacteriales bacterium 13_2_20CM_2_55_5 [MNEC]
13647
13736
+
Ser
CGA
[ENA]
¡û
Identical group No.71262 (1 seq.)
>C11106436
CP002514
Acidobacteriota
Chloracidobacterium thermophilum B [CP002514, CP002515]
1192753
1192664
-
Ser
CGA
[Ensembl]
¡û
Identical group No.72075 (1 seq.)
>W141730266
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
2117285
2117196
-
Ser
CGA
[ENA]
¡û
Identical group No.105719 (1 seq.)
>W1830000688
OMOG01000102
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
26498
26585
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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