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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = CGC
HIT:
18 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458569 (3 seq.)
>W1711573461
MNDE01000130
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
13526
13601
+
Ala
CGC
[ENA]
¡û
>W1711573475
MNDF01000226
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_56_17 [MNDF]
2347
2422
+
Ala
CGC
[ENA]
¡û
>W1711573868
MNEA01000027
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_6 [MNEA]
47303
47378
+
Ala
CGC
[ENA]
¡û
Identical group No.524402 (2 seq.)
>W1910697388
MEKR01000054
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
6123
6048
-
Ala
CGC
[ENA]
¡û
>W1910697620
MEKX01000013
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
14734
14809
+
Ala
CGC
[ENA]
¡û
Identical group No.536979 (2 seq.)
>W1910697559
MEKV01000096
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
131704
131777
+
Ala
CGC
[ENA]
¡û
>W1910697818
MELC01000091
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
131443
131516
+
Ala
CGC
[ENA]
¡û
Identical group No.552251 (5 seq.)
>W1711574614
MNFT01000021
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_69_4 [MNFT]
10283
10358
+
Ala
CGC
[ENA]
¡û
>W1711575221
MNHS01000170
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_5 [MNHS]
6564
6489
-
Ala
CGC
[ENA]
¡û
>W1711575235
MNHT01000091
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_10 [MNHT]
1433
1508
+
Ala
CGC
[ENA]
¡û
>W1711576088
MNKK01000067
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_7 [MNKK]
12863
12938
+
Ala
CGC
[ENA]
¡û
>W1711576102
MNKL01000009
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_14 [MNKL]
16053
15978
-
Ala
CGC
[ENA]
¡û
Identical group No.552255 (4 seq.)
>W1711574195
MNEY01000019
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_56_16 [MNEY]
4985
4910
-
Ala
CGC
[ENA]
¡û
>W1711574960
MNGU01000060
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_56_11 [MNGU]
8652
8577
-
Ala
CGC
[ENA]
¡û
>W1711575281
MNHX01000205
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_56_11 [MNHX]
4412
4337
-
Ala
CGC
[ENA]
¡û
>W1711576146
MNKP01000078
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_55_15 [MNKP]
19457
19382
-
Ala
CGC
[ENA]
¡û
Identical group No.565366 (1 seq.)
>C000157
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
2568155
2568230
+
Ala
CGC
[Ensembl]
¡û
Identical group No.582335 (1 seq.)
>W1910697300
MEKN01000171
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57 [MEKN]
102
27
-
Ala
CGC
[ENA]
¡û
Identical group No.587131 (1 seq.)
>C09100232
CP001472
Acidobacteriota
Acidobacterium capsulatum ATCC 51196 [CP001472]
2808970
2808895
-
Ala
CGC
[Ensembl]
¡û
Identical group No.587397 (1 seq.)
>W141696019
JMFG01000011
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
45845
45920
+
Ala
CGC
[ENA]
¡û
Identical group No.602416 (1 seq.)
>W1810047011
OKRF01000258
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA3 SbA3 Peat soil MAG SbA3 [OKRF]
5304
5229
-
Ala
CGC
[ENA]
¡û
Identical group No.602419 (1 seq.)
>W1810047205
OMOG01000007
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
3755
3830
+
Ala
CGC
[ENA]
¡û
Identical group No.602666 (2 seq.)
>W1810915060
QVQT01000005
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
133774
133699
-
Ala
CGC
[ENA]
¡û
>W1511591121
LBHJ01000004
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
528288
528213
-
Ala
CGC
[ENA]
¡û
Identical group No.611699 (1 seq.)
>W1910697481
MEKT01000174
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 [MEKT]
21394
21469
+
Ala
CGC
[ENA]
¡û
Identical group No.612681 (1 seq.)
>C161037486
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
1094871
1094796
-
Ala
CGC
-
¡û
Identical group No.642213 (1 seq.)
>W141564064
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
1259149
1259074
-
Ala
CGC
[ENA]
¡û
Identical group No.647809 (1 seq.)
>W1711384764
MEDJ01000009
Acidobacteriota
Acidobacteria bacterium SCN 69-37 [MEDJ]
110454
110529
+
Ala
CGC
[ENA]
¡û
Identical group No.647813 (1 seq.)
>W1711391197
MEKL01000058
Acidobacteriota
Acidobacteria bacterium RBG_16_70_10 [MEKL]
20329
20404
+
Ala
CGC
[ENA]
¡û
Identical group No.648702 (1 seq.)
>W141730250
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
2450587
2450662
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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