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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = CGG
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256127 (1 seq.)
>W1910697323
MEKO01000064
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
5930
6007
+
Pro
CGG
[ENA]
¡û
Identical group No.319783 (1 seq.)
>W1910697772
MELB01000137
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_10 [MELB]
4074
3998
-
Pro
CGG
[ENA]
¡û
Identical group No.348102 (2 seq.)
>W1910697498
MEKU01000007
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 [MEKU]
25560
25484
-
Pro
CGG
[ENA]
¡û
>W1910697847
MELD01000108
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14 [MELD]
10463
10539
+
Pro
CGG
[ENA]
¡û
Identical group No.364414 (2 seq.)
>W141557294
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
4351175
4351099
-
Pro
CGG
[ENA]
¡û
>W1710539046
FNVA01000002
Acidobacteriota
Bryocella elongata [FNVA]
456484
456408
-
Pro
CGG
[ENA]
¡û
Identical group No.383371 (2 seq.)
>C024934
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
4664540
4664464
-
Pro
CGG
[Ensembl]
¡û
>W09102600
AAIA01000007
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
235557
235481
-
Pro
CGG
[ENA]
¡û
Identical group No.393515 (2 seq.)
>W1711391142
MEKI01000140
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
15866
15942
+
Pro
CGG
[ENA]
¡û
>W141696043
JMFG01000027
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
15087
15011
-
Pro
CGG
[ENA]
¡û
Identical group No.415678 (1 seq.)
>C161037456
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
761445
761521
+
Pro
CGG
-
¡û
Identical group No.428399 (1 seq.)
>C181193325
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
2114023
2113947
-
Pro
CGG
-
¡û
Identical group No.446755 (1 seq.)
>W1711575238
MNHT01000111
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_10 [MNHT]
15268
15192
-
Pro
CGG
[ENA]
¡û
Identical group No.726401 (1 seq.)
>W1910697662
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
593
667
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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