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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = CGT
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.380804 (1 seq.)
>W1930012633
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
1797
1873
+
Thr
CGT
[ENA]
¡û
Identical group No.506759 (2 seq.)
>W1610576105
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
125456
125381
-
Thr
CGT
[ENA]
¡û
>W1710694369
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
125456
125381
-
Thr
CGT
[ENA]
¡û
Identical group No.554511 (1 seq.)
>W131179252
ARMF01000008
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1155038
1154963
-
Thr
CGT
[ENA]
¡û
Identical group No.562053 (2 seq.)
>W1910697586
MEKW01000021
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 [MEKW]
1598
1523
-
Thr
CGT
[ENA]
¡û
>W1910697929
MELF01000045
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 [MELF]
32865
32790
-
Thr
CGT
[ENA]
¡û
Identical group No.572515 (2 seq.)
>W1910697425
MEKS01000022
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 [MEKS]
69032
68957
-
Thr
CGT
[ENA]
¡û
>W1910697760
MELA01000136
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11 [MELA]
1916
1841
-
Thr
CGT
[ENA]
¡û
Identical group No.586978 (4 seq.)
>W131179161
ARMD01000024
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
102260
102185
-
Thr
CGT
[ENA]
¡û
>W141564031
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
1093745
1093820
+
Thr
CGT
[ENA]
¡û
>C09100237
CP001472
Acidobacteriota
Acidobacterium capsulatum ATCC 51196 [CP001472]
2266296
2266221
-
Thr
CGT
[Ensembl]
¡û
>W1511591107
LBHJ01000002
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
90060
89985
-
Thr
CGT
[ENA]
¡û
Identical group No.587014 (1 seq.)
>W121017779
AGSB01000052
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
28503
28578
+
Thr
CGT
[ENA]
¡û
Identical group No.587394 (1 seq.)
>W141696013
JMFG01000006
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
94489
94564
+
Thr
CGT
[ENA]
¡û
Identical group No.612684 (1 seq.)
>C161037493
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
282413
282338
-
Thr
CGT
-
¡û
Identical group No.613445 (1 seq.)
>W1711575906
MNJR01000083
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
33170
33245
+
Thr
CGT
[ENA]
¡û
Identical group No.628255 (1 seq.)
>C161083710
CP015136
Acidobacteriota
Luteitalea pratensis DSM 100886; HEG_-6_39 [CP015136]
5381133
5381208
+
Thr
CGT
-
¡û
Identical group No.648707 (1 seq.)
>W141730268
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
1073721
1073646
-
Thr
CGT
[ENA]
¡û
Identical group No.685062 (1 seq.)
>W1910697768
MELB01000047
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_10 [MELB]
9920
9994
+
Thr
CGT
[ENA]
¡û
Identical group No.714956 (1 seq.)
>W131179229
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1167146
1167220
+
Thr
CGT
[ENA]
¡û
Identical group No.719747 (2 seq.)
>W1910697269
MEKM01000023
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
11890
11964
+
Thr
CGT
[ENA]
¡û
>W1910697317
MEKO01000007
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
1702
1776
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK