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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = CTC
HIT:
23 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.252903 (2 seq.)
>W1711573431
MNDD01000152
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_7 [MNDD]
1586
1509
-
Glu
CTC
[ENA]
¡û
>W1711573882
MNEA01000137
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_6 [MNEA]
1465
1388
-
Glu
CTC
[ENA]
¡û
Identical group No.264174 (1 seq.)
>W1711575883
MNJR01000027
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
133562
133639
+
Glu
CTC
[ENA]
¡û
Identical group No.393177 (1 seq.)
>W121017817
AGSB01000070
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
362315
362391
+
Glu
CTC
[ENA]
¡û
Identical group No.393693 (1 seq.)
>W1511432655
JUGR01000001
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
305144
305220
+
Glu
CTC
[ENA]
¡û
Identical group No.406713 (1 seq.)
>W1911748644
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
3211755
3211679
-
Glu
CTC
[ENA]
¡û
Identical group No.406921 (1 seq.)
>W1810915026
QVQT01000001
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
379871
379795
-
Glu
CTC
[ENA]
¡û
Identical group No.416384 (1 seq.)
>W1711575889
MNJR01000028
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
123547
123474
-
Glu
CTC
[ENA]
¡û
Identical group No.441707 (1 seq.)
>W141564048
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
3123033
3123109
+
Glu
CTC
[ENA]
¡û
Identical group No.446686 (1 seq.)
>W1711502585
MKSV01000007
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
797229
797305
+
Glu
CTC
[ENA]
¡û
Identical group No.447457 (1 seq.)
>W1511591098
LBHJ01000001
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
916990
917066
+
Glu
CTC
[ENA]
¡û
Identical group No.510202 (3 seq.)
>W10119468
ADVX01000003
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
182173
182098
-
Glu
CTC
[ENA]
¡û
>W11125734
ADVX01000003
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
182173
182098
-
Glu
CTC
[ENA]
¡û
>C121006520
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
3644256
3644181
-
Glu
CTC
[Ensembl]
¡û
Identical group No.526982 (2 seq.)
>W1711575374
MNIJ01000230
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_58_21 [MNIJ]
16297
16372
+
Glu
CTC
[ENA]
¡û
>W1711575861
MNJQ01000030
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_58_11 [MNJQ]
15736
15661
-
Glu
CTC
[ENA]
¡û
Identical group No.602422 (1 seq.)
>W1810047221
OMOG01000102
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
27857
27932
+
Glu
CTC
[ENA]
¡û
Identical group No.657037 (1 seq.)
>W1711573460
MNDE01000125
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
1871
1797
-
Glu
CTC
[ENA]
¡û
Identical group No.698049 (3 seq.)
>W1711573858
MNDZ01000054
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_66_4 [MNDZ]
6259
6333
+
Glu
CTC
[ENA]
¡û
>W1711574182
MNEX01000168
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_65_14 [MNEX]
22986
23060
+
Glu
CTC
[ENA]
¡û
>W1711574941
MNGT01000069
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_65_5 [MNGT]
4739
4813
+
Glu
CTC
[ENA]
¡û
Identical group No.726406 (1 seq.)
>W1910697685
MEKY01000100
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
1534
1460
-
Glu
CTC
[ENA]
¡û
Identical group No.735311 (1 seq.)
>W141696009
JMFG01000002
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
155427
155353
-
Glu
CTC
[ENA]
¡û
Identical group No.751200 (1 seq.)
>W1910697467
MEKT01000095
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 [MEKT]
4198
4272
+
Glu
CTC
[ENA]
¡û
Identical group No.751770 (1 seq.)
>C161037463
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
1748627
1748701
+
Glu
CTC
-
¡û
Identical group No.761645 (1 seq.)
>W1711391115
MEKI01000018
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
27235
27309
+
Glu
CTC
[ENA]
¡û
Identical group No.761732 (1 seq.)
>W1711573421
MNDC01000175
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
77538
77612
+
Glu
CTC
[ENA]
¡û
Identical group No.776047 (1 seq.)
>W1711574681
MNFW01000250
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_58_4 [MNFW]
15628
15554
-
Glu
CTC
[ENA]
¡û
Identical group No.787776 (1 seq.)
>W1830011758
QFFY01000005
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
225830
225901
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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