This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = CTT
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.393175 (1 seq.)
>W121017808
AGSB01000068
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
88121
88197
+
Lys
CTT
[ENA]
¡û
Identical group No.416383 (1 seq.)
>W1711575884
MNJR01000027
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
133733
133809
+
Lys
CTT
[ENA]
¡û
Identical group No.524408 (3 seq.)
>W1910697351
MEKP01000290
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 [MEKP]
460
535
+
Lys
CTT
[ENA]
¡û
>W1910697642
MEKX01000115
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
21675
21750
+
Lys
CTT
[ENA]
¡û
>W1910697720
MEKZ01000360
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
4981
4906
-
Lys
CTT
[ENA]
¡û
Identical group No.551380 (2 seq.)
>W1710893879
LNFE01000221
Acidobacteriota
Acidobacteria bacterium Ga0077553 [LNFE]
3181
3106
-
Lys
CTT
[ENA]
¡û
>W1610754145
LNFE01000221
Acidobacteriota
Acidobacteria bacterium Ga0077553 [LNFE]
3181
3106
-
Lys
CTT
[ENA]
¡û
Identical group No.562054 (2 seq.)
>W1910697603
MEKW01000051
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 [MEKW]
52654
52579
-
Lys
CTT
[ENA]
¡û
>W1910697900
MELF01000008
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 [MELF]
121593
121518
-
Lys
CTT
[ENA]
¡û
Identical group No.572505 (1 seq.)
>W1910697672
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
2044
2119
+
Lys
CTT
[ENA]
¡û
Identical group No.572508 (1 seq.)
>W1910697683
MEKY01000067
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
4829
4904
+
Lys
CTT
[ENA]
¡û
Identical group No.572514 (2 seq.)
>W1910697443
MEKS01000048
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 [MEKS]
32855
32780
-
Lys
CTT
[ENA]
¡û
>W1910697757
MELA01000120
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11 [MELA]
17249
17324
+
Lys
CTT
[ENA]
¡û
Identical group No.602423 (1 seq.)
>W1810047223
OMOG01000130
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
2462
2387
-
Lys
CTT
[ENA]
¡û
Identical group No.628901 (1 seq.)
>W1711573422
MNDC01000177
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
53598
53673
+
Lys
CTT
[ENA]
¡û
Identical group No.628910 (2 seq.)
>W1711574612
MNFT01000015
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_69_4 [MNFT]
133
58
-
Lys
CTT
[ENA]
¡û
>W1711576093
MNKK01000073
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_7 [MNKK]
6783
6858
+
Lys
CTT
[ENA]
¡û
Identical group No.647302 (2 seq.)
>W1710827076
LLEU01000011
Acidobacteriota
Acidobacteria bacterium OLB17 [LLEU]
15185
15110
-
Lys
CTT
[ENA]
¡û
>W1610690353
LLEU01000011
Acidobacteriota
Acidobacteria bacterium OLB17 [LLEU]
15185
15110
-
Lys
CTT
[ENA]
¡û
Identical group No.648706 (1 seq.)
>W141730262
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
3640808
3640733
-
Lys
CTT
[ENA]
¡û
Identical group No.657034 (1 seq.)
>W1711573440
MNDE01000019
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
2789
2863
+
Lys
CTT
[ENA]
¡û
Identical group No.714887 (1 seq.)
>W132000196
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1170989
1171063
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK