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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = GAA
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235016 (1 seq.)
>W1730014967
LLEU01000064
Acidobacteriota
Acidobacteria bacterium OLB17 [LLEU]
115956
115881
-
Phe
GAA
[ENA]
¡û
Identical group No.554509 (1 seq.)
>W131179228
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1165718
1165793
+
Pseudo
GAA
[ENA]
¡û
Identical group No.564323 (3 seq.)
>W1711574224
MNEY01000256
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_56_16 [MNEY]
33787
33860
+
Phe
GAA
[ENA]
¡û
>W1711574966
MNGU01000072
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_56_11 [MNGU]
558
485
-
Phe
GAA
[ENA]
¡û
>W1711576143
MNKP01000056
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_55_15 [MNKP]
484
411
-
Phe
GAA
[ENA]
¡û
Identical group No.565364 (1 seq.)
>C000154
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
1319335
1319410
+
Phe
GAA
[Ensembl]
¡û
Identical group No.576088 (2 seq.)
>C024930
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
6791536
6791461
-
Phe
GAA
[Ensembl]
¡û
>W09102624
AAIA01000068
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
16696
16771
+
Phe
GAA
[ENA]
¡û
Identical group No.587015 (1 seq.)
>W121017783
AGSB01000059
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
103052
102977
-
Phe
GAA
[ENA]
¡û
Identical group No.587404 (1 seq.)
>W141696041
JMFG01000025
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
49688
49763
+
Phe
GAA
[ENA]
¡û
Identical group No.594371 (1 seq.)
>W1711391180
MEKK01000031
Acidobacteriota
Acidobacteria bacterium RBG_16_68_9 [MEKK]
2956
2883
-
Phe
GAA
[ENA]
¡û
Identical group No.604604 (1 seq.)
>C11106449
CP002515
Acidobacteriota
Chloracidobacterium thermophilum B [CP002514, CP002515]
255648
255573
-
Phe
GAA
[Ensembl]
¡û
Identical group No.612683 (1 seq.)
>C161037492
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
423644
423569
-
Phe
GAA
-
¡û
Identical group No.628256 (1 seq.)
>C161083737
CP015136
Acidobacteriota
Luteitalea pratensis DSM 100886; HEG_-6_39 [CP015136]
4106059
4105984
-
Phe
GAA
-
¡û
Identical group No.646619 (1 seq.)
>W1910697861
MELE01000044
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b [MELE]
8695
8770
+
Phe
GAA
[ENA]
¡û
Identical group No.647816 (1 seq.)
>W1711391219
MEKL01000158
Acidobacteriota
Acidobacteria bacterium RBG_16_70_10 [MEKL]
3178
3253
+
Phe
GAA
[ENA]
¡û
Identical group No.726403 (1 seq.)
>W1910697665
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
1061
1135
+
Phe
GAA
[ENA]
¡û
Identical group No.761731 (1 seq.)
>W1711573400
MNDC01000067
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
210146
210220
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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