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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = GAC
HIT:
19 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.250489 (2 seq.)
>W1910697378
MEKQ01000209
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20 [MEKQ]
1156
1233
+
Val
GAC
[ENA]
¡û
>W1910697646
MEKX01000151
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
3821
3744
-
Val
GAC
[ENA]
¡û
Identical group No.262198 (1 seq.)
>W1910697383
MEKR01000032
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
593
516
-
Val
GAC
[ENA]
¡û
Identical group No.338416 (2 seq.)
>W1810915068
QVQT01000009
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
57967
58043
+
Val
GAC
[ENA]
¡û
>W1710575737
FOZL01000001
Acidobacteriota
Granulicella pectinivorans [FOZL]
253068
253144
+
Val
GAC
[ENA]
¡û
Identical group No.348109 (2 seq.)
>W1910697561
MEKV01000099
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
42680
42756
+
Val
GAC
[ENA]
¡û
>W1910697783
MELC01000038
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
46556
46632
+
Val
GAC
[ENA]
¡û
Identical group No.364286 (1 seq.)
>W131179239
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1606711
1606787
+
Val
GAC
[ENA]
¡û
Identical group No.371270 (2 seq.)
>W1910697292
MEKM01000177
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
8934
9010
+
Val
GAC
[ENA]
¡û
>W1910697332
MEKO01000123
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
6555
6479
-
Val
GAC
[ENA]
¡û
Identical group No.380539 (1 seq.)
>W1810047039
OKRH01000143
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA6 SbA6 Peat soil MAG SbA6 [OKRH]
24729
24805
+
Val
GAC
[ENA]
¡û
Identical group No.388773 (1 seq.)
>W1910697716
MEKZ01000280
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
15181
15105
-
Val
GAC
[ENA]
¡û
Identical group No.393512 (1 seq.)
>W141696021
JMFG01000011
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
36314
36238
-
Val
GAC
[ENA]
¡û
Identical group No.393692 (1 seq.)
>W1511432678
JUGR01000001
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
2908985
2908909
-
Val
GAC
[ENA]
¡û
Identical group No.406714 (1 seq.)
>W1911748649
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
2145892
2145816
-
Val
GAC
[ENA]
¡û
Identical group No.406724 (1 seq.)
>W1810047000
OKRF01000041
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA3 SbA3 Peat soil MAG SbA3 [OKRF]
10654
10578
-
Val
GAC
[ENA]
¡û
Identical group No.445473 (1 seq.)
>W1910697889
MELE01000203
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b [MELE]
723
799
+
Val
GAC
[ENA]
¡û
Identical group No.447375 (1 seq.)
>W141730281
JNIF01000004
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
847546
847622
+
Val
GAC
[ENA]
¡û
Identical group No.485889 (1 seq.)
>W1730031522
MNGV01000081
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_55_6 [MNGV]
9962
9887
-
Val
GAC
[ENA]
¡û
Identical group No.699120 (1 seq.)
>W131221823
AUAU01000006
Acidobacteriota
Geothrix fermentans DSM 14018 [AUAU]
150873
150799
-
Val
GAC
[ENA]
¡û
Identical group No.735122 (1 seq.)
>W121017811
AGSB01000068
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
135719
135645
-
Val
GAC
[ENA]
¡û
Identical group No.751774 (1 seq.)
>C161037490
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
679408
679334
-
Val
GAC
-
¡û
Identical group No.752170 (1 seq.)
>W1711575903
MNJR01000067
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
5377
5450
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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