This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = GGA
HIT:
19 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10568 (1 seq.)
>W1711391177
MEKJ01000295
Acidobacteriota
Acidobacteria bacterium RBG_16_64_8 [MEKJ]
10317
10410
+
Ser
GGA
[ENA]
¡û
Identical group No.19628 (1 seq.)
>W1711391211
MEKL01000114
Acidobacteriota
Acidobacteria bacterium RBG_16_70_10 [MEKL]
18500
18592
+
Ser
GGA
[ENA]
¡û
Identical group No.42714 (1 seq.)
>W1711575872
MNJR01000003
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
26768
26678
-
Ser
GGA
[ENA]
¡û
Identical group No.49476 (1 seq.)
>W1810587136
QFFY01000001
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
56289
56200
-
Ser
GGA
[ENA]
¡û
Identical group No.52704 (2 seq.)
>W1610576075
LAIJ01000001
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
361963
361874
-
Ser
GGA
[ENA]
¡û
>W1710694339
LAIJ01000001
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
361963
361874
-
Ser
GGA
[ENA]
¡û
Identical group No.58544 (4 seq.)
>W1711574222
MNEY01000248
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_56_16 [MNEY]
5585
5497
-
Ser
GGA
[ENA]
¡û
>W1711574968
MNGU01000075
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_56_11 [MNGU]
4162
4250
+
Ser
GGA
[ENA]
¡û
>W1711575266
MNHX01000003
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_56_11 [MNHX]
27892
27980
+
Ser
GGA
[ENA]
¡û
>W1711576148
MNKP01000099
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_55_15 [MNKP]
5621
5533
-
Ser
GGA
[ENA]
¡û
Identical group No.59013 (1 seq.)
>W131179215
ARMF01000004
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
726849
726938
+
Ser
GGA
[ENA]
¡û
Identical group No.59946 (2 seq.)
>W1910697604
MEKW01000054
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 [MEKW]
6746
6657
-
Ser
GGA
[ENA]
¡û
>W1910697864
MELE01000065
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b [MELE]
84090
84179
+
Ser
GGA
[ENA]
¡û
Identical group No.60382 (1 seq.)
>C000181
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
4447637
4447548
-
Ser
GGA
[Ensembl]
¡û
Identical group No.61265 (1 seq.)
>W1910697656
MEKY01000042
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
6209
6298
+
Ser
GGA
[ENA]
¡û
Identical group No.63402 (1 seq.)
>W121017792
AGSB01000064
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
77025
77114
+
Ser
GGA
[ENA]
¡û
Identical group No.63445 (1 seq.)
>W141696005
JMFG01000002
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
159995
160084
+
Ser
GGA
[ENA]
¡û
Identical group No.65331 (1 seq.)
>W1911748642
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
3902740
3902651
-
Ser
GGA
[ENA]
¡û
Identical group No.68904 (1 seq.)
>W1711391118
MEKI01000018
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
14615
14526
-
Ser
GGA
[ENA]
¡û
Identical group No.71302 (1 seq.)
>W141564056
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
3194232
3194143
-
Ser
GGA
[ENA]
¡û
Identical group No.72062 (1 seq.)
>W131179136
ARMD01000016
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
179142
179053
-
Ser
GGA
[ENA]
¡û
Identical group No.72074 (1 seq.)
>W141730253
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
2898562
2898651
+
Ser
GGA
[ENA]
¡û
Identical group No.72090 (1 seq.)
>W1511591126
LBHJ01000008
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
7487
7398
-
Ser
GGA
[ENA]
¡û
Identical group No.100839 (2 seq.)
>C11122994
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
2338702
2338789
+
Ser
GGA
[Ensembl]
¡û
>W11137266
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
2407704
2407791
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK