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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = GGG
HIT:
19 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237661 (2 seq.)
>W1910697294
MEKN01000011
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57 [MEKN]
2640
2718
+
Pro
GGG
[ENA]
¡û
>W1910697324
MEKO01000064
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
7056
6978
-
Pro
GGG
[ENA]
¡û
Identical group No.245031 (4 seq.)
>W1711573860
MNDZ01000056
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_66_4 [MNDZ]
34394
34472
+
Pro
GGG
[ENA]
¡û
>W1711574184
MNEX01000183
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_65_14 [MNEX]
5633
5710
+
Pro
GGG
[ENA]
¡û
>W1711574632
MNFU01000210
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_65_8 [MNFU]
7707
7630
-
Pro
GGG
[ENA]
¡û
>W1711576116
MNKM01000181
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_65_9 [MNKM]
2786
2709
-
Pro
GGG
[ENA]
¡û
Identical group No.258447 (2 seq.)
>C024895
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
182141
182218
+
Pro
GGG
[Ensembl]
¡û
>W09102606
AAIA01000021
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
8425
8348
-
Pro
GGG
[ENA]
¡û
Identical group No.263821 (1 seq.)
>W1910697488
MEKT01000206
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 [MEKT]
51079
51002
-
Pro
GGG
[ENA]
¡û
Identical group No.299054 (1 seq.)
>W1810047090
OMOD01000115
Acidobacteriota
Candidatus Sulfotelmatobacter kueseliae SbA1 Peat soil MAG SbA1 [OMOD]
15038
15114
+
Pro
GGG
[ENA]
¡û
Identical group No.336557 (1 seq.)
>W1910697367
MEKQ01000065
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20 [MEKQ]
2437
2361
-
Pro
GGG
[ENA]
¡û
Identical group No.348101 (1 seq.)
>W1910697497
MEKU01000007
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 [MEKU]
35642
35569
-
Pro
GGG
[ENA]
¡û
Identical group No.348107 (2 seq.)
>W1910697570
MEKV01000114
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
7141
7065
-
Pro
GGG
[ENA]
¡û
>W1910697778
MELC01000024
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
182027
182103
+
Pro
GGG
[ENA]
¡û
Identical group No.362061 (5 seq.)
>W1711574616
MNFT01000032
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_69_4 [MNFT]
2108
2184
+
Pro
GGG
[ENA]
¡û
>W1711575211
MNHS01000094
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_5 [MNHS]
4692
4768
+
Pro
GGG
[ENA]
¡û
>W1711575227
MNHT01000010
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_10 [MNHT]
4827
4903
+
Pro
GGG
[ENA]
¡û
>W1711576084
MNKK01000057
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_7 [MNKK]
3319
3395
+
Pro
GGG
[ENA]
¡û
>W1711576109
MNKL01000117
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_14 [MNKL]
6586
6662
+
Pro
GGG
[ENA]
¡û
Identical group No.382041 (1 seq.)
>W1711391169
MEKJ01000206
Acidobacteriota
Acidobacteria bacterium RBG_16_64_8 [MEKJ]
563
639
+
Pro
GGG
[ENA]
¡û
Identical group No.388774 (1 seq.)
>W1910697722
MEKZ01000386
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
9304
9380
+
Pro
GGG
[ENA]
¡û
Identical group No.393511 (1 seq.)
>W141696017
JMFG01000008
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
40032
39956
-
Pro
GGG
[ENA]
¡û
Identical group No.406710 (1 seq.)
>W1911748625
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
1511473
1511549
+
Pro
GGG
[ENA]
¡û
Identical group No.415887 (2 seq.)
>W1610083333
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
591694
591770
+
Pro
GGG
[ENA]
¡û
>W1710088350
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
591694
591770
+
Pro
GGG
[ENA]
¡û
Identical group No.416388 (1 seq.)
>W1711575901
MNJR01000060
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
17860
17787
-
Pro
GGG
[ENA]
¡û
Identical group No.429197 (1 seq.)
>C161083734
CP015136
Acidobacteriota
Luteitalea pratensis DSM 100886; HEG_-6_39 [CP015136]
4598349
4598273
-
Pro
GGG
-
¡û
Identical group No.429695 (1 seq.)
>W1711391123
MEKI01000047
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
433
357
-
Pro
GGG
[ENA]
¡û
Identical group No.429847 (1 seq.)
>W1711573403
MNDC01000089
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
110467
110543
+
Pro
GGG
[ENA]
¡û
Identical group No.446634 (1 seq.)
>W1711384791
MEDJ01000020
Acidobacteriota
Acidobacteria bacterium SCN 69-37 [MEDJ]
191099
191175
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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