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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = GTA
HIT:
33 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16010 (1 seq.)
>W131179224
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1164773
1164865
+
Tyr
GTA
[ENA]
¡û
Identical group No.65337 (1 seq.)
>W1810047211
OMOG01000102
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
25991
26080
+
Tyr
GTA
[ENA]
¡û
Identical group No.66920 (1 seq.)
>W1711575879
MNJR01000027
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
132420
132508
+
Tyr
GTA
[ENA]
¡û
Identical group No.79526 (1 seq.)
>W1711575700
MNJG01000206
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_56_7 [MNJG]
11221
11309
+
Tyr
GTA
[ENA]
¡û
Identical group No.79667 (1 seq.)
>W131179261
ARMF01000009
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1198770
1198858
+
Tyr
GTA
[ENA]
¡û
Identical group No.80261 (3 seq.)
>W1910697273
MEKM01000040
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
457
369
-
Tyr
GTA
[ENA]
¡û
>W1910697306
MEKN01000274
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57 [MEKN]
460
372
-
Tyr
GTA
[ENA]
¡û
>W1910697314
MEKO01000004
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
461
373
-
Tyr
GTA
[ENA]
¡û
Identical group No.80453 (3 seq.)
>W1711574210
MNEY01000138
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_56_16 [MNEY]
8010
8096
+
Tyr
GTA
[ENA]
¡û
>W1711574979
MNGU01000220
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_56_11 [MNGU]
7782
7868
+
Tyr
GTA
[ENA]
¡û
>W1711576152
MNKP01000109
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_55_15 [MNKP]
403
317
-
Tyr
GTA
[ENA]
¡û
Identical group No.83290 (1 seq.)
>W1910697387
MEKR01000040
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
20939
21027
+
Tyr
GTA
[ENA]
¡û
Identical group No.85948 (1 seq.)
>W1711575004
MNGW01000087
Acidobacteriota
Acidobacteriales bacterium 13_1_40CM_3_55_5 [MNGW]
7348
7436
+
Tyr
GTA
[ENA]
¡û
Identical group No.90395 (1 seq.)
>W1810587172
QFFY01000008
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
238709
238796
+
Tyr
GTA
[ENA]
¡û
Identical group No.100900 (1 seq.)
>C000166
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
5546057
5545970
-
Tyr
GTA
[Ensembl]
¡û
Identical group No.102273 (2 seq.)
>C024918
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
7940543
7940630
+
Tyr
GTA
[Ensembl]
¡û
>W09102628
AAIA01000075
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
2229
2316
+
Tyr
GTA
[ENA]
¡û
Identical group No.105675 (1 seq.)
>W1911748631
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
2195263
2195350
+
Tyr
GTA
[ENA]
¡û
Identical group No.108799 (1 seq.)
>C181193295
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
1525235
1525322
+
Tyr
GTA
-
¡û
Identical group No.118751 (1 seq.)
>W1710534854
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
1537225
1537311
+
Tyr
GTA
[ENA]
¡û
Identical group No.123041 (2 seq.)
>W1610576107
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
1165
1079
-
Tyr
GTA
[ENA]
¡û
>W1710694371
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
1165
1079
-
Tyr
GTA
[ENA]
¡û
Identical group No.123733 (3 seq.)
>W10119474
ADVX01000005
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
24727
24813
+
Tyr
GTA
[ENA]
¡û
>W11125740
ADVX01000005
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
24727
24813
+
Tyr
GTA
[ENA]
¡û
>C121006493
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
874167
874253
+
Tyr
GTA
[Ensembl]
¡û
Identical group No.123896 (2 seq.)
>W131216797
ATWD01000001
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
4220751
4220837
+
Tyr
GTA
[ENA]
¡û
>W141817060
JQKI01000084
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
22159
22245
+
Tyr
GTA
[ENA]
¡û
Identical group No.127017 (4 seq.)
>W1711502600
MKSV01000009
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
269011
269097
+
Tyr
GTA
[ENA]
¡û
>W131179202
ARME01000011
Acidobacteriota
Acidobacteriaceae bacterium KBS 89 [ARME]
344191
344105
-
Tyr
GTA
[ENA]
¡û
>W1710539041
FNVA01000002
Acidobacteriota
Bryocella elongata [FNVA]
405814
405900
+
Tyr
GTA
[ENA]
¡û
>W1710575775
FOZL01000002
Acidobacteriota
Granulicella pectinivorans [FOZL]
556218
556132
-
Tyr
GTA
[ENA]
¡û
Identical group No.132820 (1 seq.)
>C121011830
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
1025672
1025586
-
Tyr
GTA
[Ensembl]
¡û
Identical group No.133045 (1 seq.)
>W141557302
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
1807818
1807732
-
Tyr
GTA
[ENA]
¡û
Identical group No.135259 (2 seq.)
>C11123010
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
4169247
4169161
-
Tyr
GTA
[Ensembl]
¡û
>W11137282
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
4225530
4225444
-
Tyr
GTA
[ENA]
¡û
Identical group No.136728 (1 seq.)
>W1910697679
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
2924
3011
+
Tyr
GTA
[ENA]
¡û
Identical group No.137160 (1 seq.)
>W1711391156
MEKJ01000007
Acidobacteriota
Acidobacteria bacterium RBG_16_64_8 [MEKJ]
1422
1508
+
Tyr
GTA
[ENA]
¡û
Identical group No.139811 (1 seq.)
>W141696046
JMFG01000037
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
365
279
-
Tyr
GTA
[ENA]
¡û
Identical group No.139855 (1 seq.)
>W1511432694
JUGR01000004
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
2186
2100
-
Tyr
GTA
[ENA]
¡û
Identical group No.145067 (1 seq.)
>C161037451
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
373197
373283
+
Tyr
GTA
-
¡û
Identical group No.146489 (1 seq.)
>W1910548828
FZOU01000005
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
349165
349251
+
Tyr
GTA
[ENA]
¡û
Identical group No.148326 (1 seq.)
>W1711391148
MEKI01000160
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
48038
48124
+
Tyr
GTA
[ENA]
¡û
Identical group No.152294 (1 seq.)
>W1910697873
MELE01000093
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b [MELE]
31598
31684
+
Tyr
GTA
[ENA]
¡û
Identical group No.169295 (1 seq.)
>W1711391175
MEKJ01000271
Acidobacteriota
Acidobacteria bacterium RBG_16_64_8 [MEKJ]
2415
2500
+
Tyr
GTA
[ENA]
¡û
Identical group No.171855 (1 seq.)
>W1711391185
MEKK01000057
Acidobacteriota
Acidobacteria bacterium RBG_16_68_9 [MEKK]
1581
1499
-
Tyr
GTA
[ENA]
¡û
Identical group No.179238 (1 seq.)
>W1711384772
MEDJ01000009
Acidobacteriota
Acidobacteria bacterium SCN 69-37 [MEDJ]
417406
417321
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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