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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = GTG
HIT:
35 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.269579 (1 seq.)
>W1711391209
MEKL01000098
Acidobacteriota
Acidobacteria bacterium RBG_16_70_10 [MEKL]
2594
2517
-
His
GTG
[ENA]
¡û
Identical group No.303087 (1 seq.)
>W1711574985
MNGV01000033
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_55_6 [MNGV]
23651
23727
+
His
GTG
[ENA]
¡û
Identical group No.364282 (1 seq.)
>W131179218
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
130720
130796
+
His
GTG
[ENA]
¡û
Identical group No.380291 (1 seq.)
>W1910697667
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
1465
1541
+
His
GTG
[ENA]
¡û
Identical group No.380536 (1 seq.)
>W1810046989
OKRE01000148
Acidobacteriota
Candidatus Sulfotelmatobacter sp. SbA7 SbA7 Peat soil MAG SbA7 [OKRE]
5836
5912
+
His
GTG
[ENA]
¡û
Identical group No.393171 (1 seq.)
>W121017784
AGSB01000059
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
43876
43800
-
His
GTG
[ENA]
¡û
Identical group No.415881 (2 seq.)
>W1610083315
CBXV010000005
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
5280
5356
+
His
GTG
[ENA]
¡û
>W1710088332
CBXV010000005
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
5280
5356
+
His
GTG
[ENA]
¡û
Identical group No.416386 (1 seq.)
>W1711575891
MNJR01000034
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
30355
30280
-
His
GTG
[ENA]
¡û
Identical group No.429697 (1 seq.)
>W1711391140
MEKI01000137
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
17852
17776
-
His
GTG
[ENA]
¡û
Identical group No.441531 (1 seq.)
>C11106434
CP002514
Acidobacteriota
Chloracidobacterium thermophilum B [CP002514, CP002515]
1957180
1957104
-
His
GTG
[Ensembl]
¡û
Identical group No.482670 (1 seq.)
>W1810047083
OMOD01000111
Acidobacteriota
Candidatus Sulfotelmatobacter kueseliae SbA1 Peat soil MAG SbA1 [OMOD]
147899
147974
+
His
GTG
[ENA]
¡û
Identical group No.486965 (1 seq.)
>W1711573490
MNDG01000068
Acidobacteriota
Acidobacteriales bacterium 13_2_20CM_55_8 [MNDG]
7917
7992
+
His
GTG
[ENA]
¡û
Identical group No.524399 (1 seq.)
>W1910697361
MEKQ01000001
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20 [MEKQ]
1084
1009
-
His
GTG
[ENA]
¡û
Identical group No.552253 (4 seq.)
>W1711574215
MNEY01000166
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_56_16 [MNEY]
16941
16868
-
His
GTG
[ENA]
¡û
>W1711574961
MNGU01000062
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_56_11 [MNGU]
307
380
+
His
GTG
[ENA]
¡û
>W1711575269
MNHX01000034
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_56_11 [MNHX]
197
270
+
His
GTG
[ENA]
¡û
>W1711576150
MNKP01000100
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_55_15 [MNKP]
3379
3306
-
His
GTG
[ENA]
¡û
Identical group No.562045 (1 seq.)
>W1910697334
MEKP01000003
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 [MEKP]
501
426
-
His
GTG
[ENA]
¡û
Identical group No.564765 (2 seq.)
>C11122986
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
359229
359304
+
His
GTG
[Ensembl]
¡û
>W11137258
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
428231
428306
+
His
GTG
[ENA]
¡û
Identical group No.582336 (1 seq.)
>W1910697301
MEKN01000189
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57 [MEKN]
884
959
+
His
GTG
[ENA]
¡û
Identical group No.587403 (1 seq.)
>W141696039
JMFG01000024
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
20941
21016
+
His
GTG
[ENA]
¡û
Identical group No.587624 (1 seq.)
>W1511432669
JUGR01000001
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
2282154
2282229
+
His
GTG
[ENA]
¡û
Identical group No.602254 (1 seq.)
>W1910697407
MEKR01000184
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
12776
12701
-
His
GTG
[ENA]
¡û
Identical group No.602417 (1 seq.)
>W1810047017
OKRF01000508
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA3 SbA3 Peat soil MAG SbA3 [OKRF]
12102
12029
-
His
GTG
[ENA]
¡û
Identical group No.602427 (1 seq.)
>W1810047247
OMOG01000454
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
3329
3404
+
His
GTG
[ENA]
¡û
Identical group No.612265 (1 seq.)
>C161037481
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
1385281
1385206
-
His
GTG
-
¡û
Identical group No.648708 (1 seq.)
>W141730283
JNIF01000004
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
970777
970702
-
His
GTG
[ENA]
¡û
Identical group No.671674 (1 seq.)
>W1810587148
QFFY01000003
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
732883
732957
+
His
GTG
[ENA]
¡û
Identical group No.704292 (2 seq.)
>W1910697524
MEKU01000082
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 [MEKU]
6277
6203
-
His
GTG
[ENA]
¡û
>W1910697856
MELD01000147
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14 [MELD]
5973
5899
-
His
GTG
[ENA]
¡û
Identical group No.704295 (2 seq.)
>W1910697571
MEKV01000121
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
17985
17911
-
His
GTG
[ENA]
¡û
>W1910697786
MELC01000038
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
242233
242307
+
His
GTG
[ENA]
¡û
Identical group No.719749 (2 seq.)
>W1910697600
MEKW01000051
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 [MEKW]
58974
58900
-
His
GTG
[ENA]
¡û
>W1910697897
MELF01000008
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 [MELF]
127913
127839
-
His
GTG
[ENA]
¡û
Identical group No.721696 (1 seq.)
>C000162
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
4616518
4616592
+
His
GTG
[Ensembl]
¡û
Identical group No.726409 (2 seq.)
>W1910697440
MEKS01000048
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 [MEKS]
43245
43171
-
His
GTG
[ENA]
¡û
>W1910697754
MELA01000120
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11 [MELA]
6792
6866
+
His
GTG
[ENA]
¡û
Identical group No.744698 (1 seq.)
>W1911748622
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
1157532
1157606
+
His
GTG
[ENA]
¡û
Identical group No.744707 (1 seq.)
>W1810047239
OMOG01000368
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
5764
5838
+
His
GTG
[ENA]
¡û
Identical group No.760816 (1 seq.)
>C181193301
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
3340461
3340535
+
His
GTG
-
¡û
Identical group No.775300 (1 seq.)
>W1910697868
MELE01000077
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b [MELE]
33511
33585
+
His
GTG
[ENA]
¡û
Identical group No.776530 (1 seq.)
>W1511591104
LBHJ01000002
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
77922
77996
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK