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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = GTT
HIT:
19 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.348113 (2 seq.)
>W1910697546
MEKV01000058
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
17466
17539
+
Asn
GTT
[ENA]
¡û
>W1910697798
MELC01000062
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
16737
16664
-
Asn
GTT
[ENA]
¡û
Identical group No.364283 (1 seq.)
>W131179225
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1165374
1165450
+
Asn
GTT
[ENA]
¡û
Identical group No.458567 (2 seq.)
>W1711573449
MNDE01000079
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
4
79
+
Asn
GTT
[ENA]
¡û
>W1711573871
MNEA01000047
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_6 [MNEA]
5804
5879
+
Asn
GTT
[ENA]
¡û
Identical group No.552258 (1 seq.)
>W1711575708
MNJG01000237
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_56_7 [MNJG]
4542
4617
+
Asn
GTT
[ENA]
¡û
Identical group No.564321 (2 seq.)
>W1711574641
MNFV01000021
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_61_5 [MNFV]
5340
5415
+
Asn
GTT
[ENA]
¡û
>W1711575250
MNHV01000005
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_60_7 [MNHV]
6282
6357
+
Asn
GTT
[ENA]
¡û
Identical group No.602424 (1 seq.)
>W1810047241
OMOG01000368
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
5923
5998
+
Asn
GTT
[ENA]
¡û
Identical group No.613447 (1 seq.)
>W1711575920
MNJR01000142
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
124057
123982
-
Asn
GTT
[ENA]
¡û
Identical group No.628899 (1 seq.)
>W1711573404
MNDC01000089
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
89120
89045
-
Asn
GTT
[ENA]
¡û
Identical group No.647966 (1 seq.)
>W1711574685
MNFW01000273
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_58_4 [MNFW]
17378
17303
-
Asn
GTT
[ENA]
¡û
Identical group No.687053 (1 seq.)
>W1711575249
MNHU01000220
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_64_6 [MNHU]
15715
15789
+
Asn
GTT
[ENA]
¡û
Identical group No.726402 (1 seq.)
>W1910697663
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
674
748
+
Asn
GTT
[ENA]
¡û
Identical group No.727582 (1 seq.)
>W1711391154
MEKJ01000001
Acidobacteriota
Acidobacteria bacterium RBG_16_64_8 [MEKJ]
6074
6148
+
Asn
GTT
[ENA]
¡û
Identical group No.735116 (1 seq.)
>W121017793
AGSB01000064
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
74899
74825
-
Asn
GTT
[ENA]
¡û
Identical group No.735312 (1 seq.)
>W141696020
JMFG01000011
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
120206
120132
-
Asn
GTT
[ENA]
¡û
Identical group No.751198 (1 seq.)
>W1910697280
MEKM01000090
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
2809
2735
-
Asn
GTT
[ENA]
¡û
Identical group No.751865 (2 seq.)
>W1610083335
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
774029
774103
+
Asn
GTT
[ENA]
¡û
>W1710088352
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
774029
774103
+
Asn
GTT
[ENA]
¡û
Identical group No.761648 (1 seq.)
>W1711391146
MEKI01000150
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
1086
1160
+
Asn
GTT
[ENA]
¡û
Identical group No.775651 (2 seq.)
>W1710827112
LLEU01000059
Acidobacteriota
Acidobacteria bacterium OLB17 [LLEU]
58631
58557
-
Asn
GTT
[ENA]
¡û
>W1610690389
LLEU01000059
Acidobacteriota
Acidobacteria bacterium OLB17 [LLEU]
58631
58557
-
Asn
GTT
[ENA]
¡û
Identical group No.775937 (1 seq.)
>W1711391192
MEKL01000007
Acidobacteriota
Acidobacteria bacterium RBG_16_70_10 [MEKL]
3375
3449
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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