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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = TAC
HIT:
34 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257851 (1 seq.)
>W1910697666
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
1384
1461
+
Val
TAC
[ENA]
¡û
Identical group No.299355 (1 seq.)
>W1810587127
QFFY01000001
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
105666
105742
+
Val
TAC
[ENA]
¡û
Identical group No.302395 (4 seq.)
>C11123019
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
2979422
2979346
-
Val
TAC
[Ensembl]
¡û
>W11137291
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
3035705
3035629
-
Val
TAC
[ENA]
¡û
>C121011827
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
1920073
1919997
-
Val
TAC
[Ensembl]
¡û
>W1710534879
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
4548436
4548360
-
Val
TAC
[ENA]
¡û
Identical group No.320939 (2 seq.)
>W1610576114
LAIJ01000012
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
224771
224847
+
Val
TAC
[ENA]
¡û
>W1710694378
LAIJ01000012
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
224771
224847
+
Val
TAC
[ENA]
¡û
Identical group No.324000 (5 seq.)
>C181193328
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
1250134
1250058
-
Val
TAC
-
¡û
>W10119483
ADVX01000007
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
38268
38192
-
Val
TAC
[ENA]
¡û
>W11125749
ADVX01000007
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
38268
38192
-
Val
TAC
[ENA]
¡û
>C121006529
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
1703323
1703247
-
Val
TAC
[Ensembl]
¡û
>W1710539054
FNVA01000004
Acidobacteriota
Bryocella elongata [FNVA]
386340
386264
-
Val
TAC
[ENA]
¡û
Identical group No.336563 (1 seq.)
>W1910697633
MEKX01000065
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
8204
8128
-
Val
TAC
[ENA]
¡û
Identical group No.364290 (1 seq.)
>W131179268
ARMF01000009
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
121676
121600
-
Val
TAC
[ENA]
¡û
Identical group No.371479 (1 seq.)
>W1810047027
OKRG01000106
Acidobacteriota
Acidobacteriia bacterium SbA2 SbA2 Peat soil MAG SbA2 [OKRG]
45349
45425
+
Val
TAC
[ENA]
¡û
Identical group No.380290 (1 seq.)
>W1910697653
MEKY01000027
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
14022
14098
+
Val
TAC
[ENA]
¡û
Identical group No.380294 (1 seq.)
>W1910697693
MEKY01000167
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
6805
6881
+
Val
TAC
[ENA]
¡û
Identical group No.383372 (2 seq.)
>C024936
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
2995095
2995019
-
Val
TAC
[Ensembl]
¡û
>W09102620
AAIA01000055
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
40027
40103
+
Val
TAC
[ENA]
¡û
Identical group No.388772 (1 seq.)
>W1910697713
MEKZ01000217
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
883
807
-
Val
TAC
[ENA]
¡û
Identical group No.393689 (1 seq.)
>W1511432660
JUGR01000001
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
944289
944365
+
Val
TAC
[ENA]
¡û
Identical group No.406712 (1 seq.)
>W1911748641
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
3958777
3958701
-
Val
TAC
[ENA]
¡û
Identical group No.406727 (1 seq.)
>W1810047014
OKRF01000399
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA3 SbA3 Peat soil MAG SbA3 [OKRF]
15
91
+
Val
TAC
[ENA]
¡û
Identical group No.406736 (1 seq.)
>W1810047236
OMOG01000344
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
4303
4379
+
Val
TAC
[ENA]
¡û
Identical group No.406923 (1 seq.)
>W1810915029
QVQT01000002
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
317587
317663
+
Val
TAC
[ENA]
¡û
Identical group No.415680 (1 seq.)
>C161037465
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
2728009
2728085
+
Val
TAC
-
¡û
Identical group No.421899 (1 seq.)
>W1910548811
FZOU01000002
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
364136
364060
-
Val
TAC
[ENA]
¡û
Identical group No.445601 (1 seq.)
>W1810046947
OKRB01000113
Acidobacteriota
Candidatus Sulfotelmatomonas gaucii SbA5 Peat soil MAG SbA5 [OKRB]
84981
84905
-
Val
TAC
[ENA]
¡û
Identical group No.447456 (1 seq.)
>W1511591125
LBHJ01000008
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
175209
175285
+
Val
TAC
[ENA]
¡û
Identical group No.458565 (3 seq.)
>W1711573444
MNDE01000036
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
9960
10035
+
Val
TAC
[ENA]
¡û
>W1711573894
MNEB01000068
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_12 [MNEB]
87
12
-
Val
TAC
[ENA]
¡û
>W1711575368
MNIJ01000178
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_58_21 [MNIJ]
7669
7594
-
Val
TAC
[ENA]
¡û
Identical group No.526983 (1 seq.)
>W1711575860
MNJQ01000013
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_58_11 [MNJQ]
1428
1503
+
Val
TAC
[ENA]
¡û
Identical group No.536978 (2 seq.)
>W1910697547
MEKV01000058
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
21922
21995
+
Val
TAC
[ENA]
¡û
>W1910697799
MELC01000062
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
12282
12209
-
Val
TAC
[ENA]
¡û
Identical group No.552254 (3 seq.)
>W1711574202
MNEY01000078
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_56_16 [MNEY]
23219
23147
-
Val
TAC
[ENA]
¡û
>W1711574971
MNGU01000100
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_56_11 [MNGU]
6550
6478
-
Val
TAC
[ENA]
¡û
>W1711575278
MNHX01000186
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_56_11 [MNHX]
6784
6712
-
Val
TAC
[ENA]
¡û
Identical group No.587021 (1 seq.)
>W121017823
AGSB01000070
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
197689
197614
-
Val
TAC
[ENA]
¡û
Identical group No.587399 (1 seq.)
>W141696026
JMFG01000017
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
98
173
+
Val
TAC
[ENA]
¡û
Identical group No.628900 (1 seq.)
>W1711573405
MNDC01000114
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
118479
118554
+
Val
TAC
[ENA]
¡û
Identical group No.704293 (2 seq.)
>W1910697528
MEKU01000095
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 [MEKU]
4470
4399
-
Val
TAC
[ENA]
¡û
>W1910697824
MELD01000019
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14 [MELD]
327
256
-
Val
TAC
[ENA]
¡û
Identical group No.739786 (1 seq.)
>W1711391182
MEKK01000057
Acidobacteriota
Acidobacteria bacterium RBG_16_68_9 [MEKK]
5938
5866
-
Val
TAC
[ENA]
¡û
Identical group No.761649 (1 seq.)
>W1711391151
MEKI01000162
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
7707
7633
-
Val
TAC
[ENA]
¡û
Identical group No.775935 (1 seq.)
>W1711384767
MEDJ01000009
Acidobacteriota
Acidobacteria bacterium SCN 69-37 [MEDJ]
473617
473691
+
Val
TAC
[ENA]
¡û
Identical group No.775940 (1 seq.)
>W1711391213
MEKL01000130
Acidobacteriota
Acidobacteria bacterium RBG_16_70_10 [MEKL]
4755
4829
+
Val
TAC
[ENA]
¡û
Identical group No.824185 (2 seq.)
>W1610083317
CBXV010000005
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
163060
162985
-
Val
TAC
[ENA]
¡û
>W1710088334
CBXV010000005
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
163060
162985
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK