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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = TAG
HIT:
72 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.123368 (1 seq.)
>W1810047016
OKRF01000503
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA3 SbA3 Peat soil MAG SbA3 [OKRF]
22157
22070
-
Leu
TAG
[ENA]
¡û
Identical group No.128512 (1 seq.)
>W1810047248
OMOG01000481
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
5334
5248
-
Leu
TAG
[ENA]
¡û
Identical group No.133768 (2 seq.)
>C024914
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
6256025
6256111
+
Leu
TAG
[Ensembl]
¡û
>W09102604
AAIA01000015
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
40128
40042
-
Leu
TAG
[ENA]
¡û
Identical group No.135306 (1 seq.)
>C161083716
CP015136
Acidobacteriota
Luteitalea pratensis DSM 100886; HEG_-6_39 [CP015136]
6387864
6387947
+
Leu
TAG
-
¡û
Identical group No.135864 (6 seq.)
>W1910697284
MEKM01000112
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
2416
2331
-
Leu
TAG
[ENA]
¡û
>W1910697302
MEKN01000200
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57 [MEKN]
6745
6660
-
Leu
TAG
[ENA]
¡û
>W1910697328
MEKO01000088
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
2409
2324
-
Leu
TAG
[ENA]
¡û
>W2010830709
MEKM01000112
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
2416
2331
-
Leu
TAG
[ENA]
¡û
>W2010830727
MEKN01000200
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57 [MEKN]
6745
6660
-
Leu
TAG
[ENA]
¡û
>W2010830753
MEKO01000088
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
2409
2324
-
Leu
TAG
[ENA]
¡û
Identical group No.135874 (4 seq.)
>W1910697502
MEKU01000019
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 [MEKU]
55243
55160
-
Leu
TAG
[ENA]
¡û
>W1910697831
MELD01000038
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14 [MELD]
4078
3995
-
Leu
TAG
[ENA]
¡û
>W2010830927
MEKU01000019
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 [MEKU]
55243
55160
-
Leu
TAG
[ENA]
¡û
>W2010831256
MELD01000038
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14 [MELD]
4078
3995
-
Leu
TAG
[ENA]
¡û
Identical group No.136544 (1 seq.)
>W131179213
ARMF01000001
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
10000
9914
-
Leu
TAG
[ENA]
¡û
Identical group No.149190 (1 seq.)
>W1711384780
MEDJ01000010
Acidobacteriota
Acidobacteria bacterium SCN 69-37 [MEDJ]
93618
93532
-
Leu
TAG
[ENA]
¡û
Identical group No.150766 (2 seq.)
>W1910697880
MELE01000104
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b [MELE]
43239
43156
-
Leu
TAG
[ENA]
¡û
>W2010831305
MELE01000104
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b [MELE]
43239
43156
-
Leu
TAG
[ENA]
¡û
Identical group No.160355 (1 seq.)
>W1711574638
MNFV01000005
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_61_5 [MNFV]
8798
8884
+
Leu
TAG
[ENA]
¡û
Identical group No.161338 (4 seq.)
>W1910697454
MEKS01000057
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 [MEKS]
102291
102208
-
Leu
TAG
[ENA]
¡û
>W1910697746
MELA01000104
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11 [MELA]
26083
26000
-
Leu
TAG
[ENA]
¡û
>W2010830879
MEKS01000057
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 [MEKS]
102291
102208
-
Leu
TAG
[ENA]
¡û
>W2010831171
MELA01000104
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11 [MELA]
26083
26000
-
Leu
TAG
[ENA]
¡û
Identical group No.161339 (2 seq.)
>W1910697593
MEKW01000035
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 [MEKW]
100628
100712
+
Leu
TAG
[ENA]
¡û
>W2010831018
MEKW01000035
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 [MEKW]
100628
100712
+
Leu
TAG
[ENA]
¡û
Identical group No.161341 (2 seq.)
>W1910697901
MELF01000010
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 [MELF]
199064
199148
+
Leu
TAG
[ENA]
¡û
>W2010831326
MELF01000010
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 [MELF]
199064
199148
+
Leu
TAG
[ENA]
¡û
Identical group No.167358 (1 seq.)
>W1810046996
OKRE01000177
Acidobacteriota
Candidatus Sulfotelmatobacter sp. SbA7 SbA7 Peat soil MAG SbA7 [OKRE]
3877
3963
+
Leu
TAG
[ENA]
¡û
Identical group No.167995 (1 seq.)
>W2110094201
CAJCIT010000275
Acidobacteriota
Acidobacteriaceae bacterium [CAJCIT]
28258
28172
-
Leu
TAG
[ENA]
¡û
Identical group No.168839 (1 seq.)
>C231004535
AP024452
Acidobacteriota
Luteitalea sp. TBR-22 [AP024452]
5255759
5255845
+
Leu
TAG
-
¡û
Identical group No.169281 (2 seq.)
>W1910697654
MEKY01000036
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
6210
6124
-
Leu
TAG
[ENA]
¡û
>W2010831079
MEKY01000036
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
6210
6124
-
Leu
TAG
[ENA]
¡û
Identical group No.177598 (1 seq.)
>W1711391193
MEKL01000013
Acidobacteriota
Acidobacteria bacterium RBG_16_70_10 [MEKL]
20354
20437
+
Leu
TAG
[ENA]
¡û
Identical group No.177894 (1 seq.)
>W1711575895
MNJR01000049
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
9303
9388
+
Leu
TAG
[ENA]
¡û
Identical group No.195057 (1 seq.)
>W1711391126
MEKI01000060
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
25340
25425
+
Leu
TAG
[ENA]
¡û
Identical group No.195166 (1 seq.)
>W1711573402
MNDC01000089
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
6951
7036
+
Leu
TAG
[ENA]
¡û
Identical group No.195397 (1 seq.)
>C211132789
CP060394
Acidobacteriota
Acidobacterium sp. 4Y35 [CP060394]
3562837
3562922
+
Leu
TAG
-
¡û
Identical group No.200598 (1 seq.)
>C211198185
CP065005
Acidobacteriota
Acidobacteria bacterium [CP065005]
4186620
4186702
+
Leu
TAG
-
¡û
Identical group No.203080 (1 seq.)
>W141696007
JMFG01000002
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
212925
213010
+
Leu
TAG
[ENA]
¡û
Identical group No.210544 (2 seq.)
>W1511432664
JUGR01000001
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
1703493
1703577
+
Leu
TAG
[ENA]
¡û
>W1710534883
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
3398248
3398164
-
Leu
TAG
[ENA]
¡û
Identical group No.211098 (1 seq.)
>C211132751
CP060393
Acidobacteriota
Edaphobacter sp. 4G125 [CP060393]
3536226
3536142
-
Leu
TAG
-
¡û
Identical group No.212010 (1 seq.)
>C121011812
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
4475523
4475607
+
Leu
TAG
[Ensembl]
¡û
Identical group No.212479 (2 seq.)
>W1910548832
FZOU01000006
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
81711
81795
+
Leu
TAG
[ENA]
¡û
>W2010430593
FZOU01000006
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
81711
81795
+
Leu
TAG
[ENA]
¡û
Identical group No.213084 (1 seq.)
>W131216785
ATWD01000001
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
912992
913076
+
Leu
TAG
[ENA]
¡û
Identical group No.215507 (2 seq.)
>W2010370062
CAHJWL010000005
Acidobacteriota
Acidobacteriaceae bacterium [CAHJWL]
23312
23228
-
Leu
TAG
[ENA]
¡û
>W2011411645
RDSM01000001
Acidobacteriota
Granulicella sibirica AF10 [RDSM]
830951
831035
+
Leu
TAG
[ENA]
¡û
Identical group No.220960 (2 seq.)
>W141557279
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
1890517
1890601
+
Leu
TAG
[ENA]
¡û
>C201212260
CP048114
Acidobacteriota
Edaphobacter sp. 12200R-103 [CP048114]
4513052
4512968
-
Leu
TAG
-
¡û
Identical group No.223077 (1 seq.)
>W1810046925
OKRB01000001
Acidobacteriota
Candidatus Sulfotelmatomonas gaucii SbA5 Peat soil MAG SbA5 [OKRB]
7337
7421
+
Leu
TAG
[ENA]
¡û
Identical group No.223529 (1 seq.)
>W2010369955
CAHJWI010000048
Acidobacteriota
Acidobacteriaceae bacterium [CAHJWI]
10956
10872
-
Leu
TAG
[ENA]
¡û
Identical group No.223923 (1 seq.)
>W2110094215
CAJCIV010000046
Acidobacteriota
Acidobacteriaceae bacterium [CAJCIV]
1045
964
-
Leu
TAG
[ENA]
¡û
Identical group No.224866 (1 seq.)
>W1710539055
FNVA01000004
Acidobacteriota
Bryocella elongata [FNVA]
291312
291228
-
Leu
TAG
[ENA]
¡û
Identical group No.225419 (3 seq.)
>W131221845
AUAU01000018
Acidobacteriota
Geothrix fermentans DSM 14018 [AUAU]
53189
53273
+
Leu
TAG
[ENA]
¡û
>C241010198
AP027079
Acidobacteriota
Geothrix oryzae Red222 [AP027079]
805420
805336
-
Leu
TAG
-
¡û
>W2310020917
BSDE01000004
Acidobacteriota
Geothrix limicola Red804 [BSDE]
267139
267055
-
Leu
TAG
[ENA]
¡û
Identical group No.225886 (1 seq.)
>W2010781550
LMUM01000002
Acidobacteriota
Acidobacterium sp. S8 [LMUM]
23150
23234
+
Leu
TAG
[ENA]
¡û
Identical group No.227743 (2 seq.)
>W2011548519
SDMK01000002
Acidobacteriota
Acidipila dinghuensis DHOF10 [SDMK]
1135476
1135560
+
Leu
TAG
[ENA]
¡û
>W2110024369
BMGU01000004
Acidobacteriota
Acidipila dinghuensis CGMCC 1.13007 [BMGU]
494627
494711
+
Leu
TAG
[ENA]
¡û
Identical group No.228094 (1 seq.)
>W2110027308
BMJB01000001
Acidobacteriota
Edaphobacter acidisoli CGMCC 1.15447 [BMJB]
2111785
2111869
+
Leu
TAG
[ENA]
¡û
Identical group No.230725 (2 seq.)
>W1610083338
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
845550
845466
-
Leu
TAG
[ENA]
¡û
>W1710088355
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
845550
845466
-
Leu
TAG
[ENA]
¡û
Identical group No.230859 (1 seq.)
>W141564054
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
3456046
3455962
-
Leu
TAG
[ENA]
¡û
Identical group No.230864 (1 seq.)
>W141730282
JNIF01000004
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
947750
947834
+
Leu
TAG
[ENA]
¡û
Identical group No.234034 (1 seq.)
>W2110093153
CAJCHM010000014
Acidobacteriota
Acidobacteria bacterium [CAJCHM]
31147
31228
+
Leu
TAG
[ENA]
¡û
Identical group No.234927 (1 seq.)
>C211000343
AP017470
Acidobacteriota
Thermotomaculum hydrothermale AC55 [AP017470]
325926
326010
+
Leu
TAG
-
¡û
Identical group No.234974 (1 seq.)
>C211181140
CP063849
Acidobacteriota
Paludibaculum fermentans P105 [CP063849]
1867410
1867494
+
Leu
TAG
-
¡û
Identical group No.234977 (1 seq.)
>C211197975
CP065000
Acidobacteriota
Acidobacteria bacterium [CP065000]
3340538
3340622
+
Leu
TAG
-
¡û
Identical group No.234978 (1 seq.)
>C211198083
CP065003
Acidobacteriota
Acidobacteria bacterium [CP065003]
483538
483622
+
Leu
TAG
-
¡û
Identical group No.235105 (2 seq.)
>W141564283
JIAQ01000010
Acidobacteriota
Acidobacteriaceae bacterium URHE0068 [JIAQ]
197488
197572
+
Leu
TAG
[ENA]
¡û
>C231331413
CP093313
Acidobacteriota
Occallatibacter riparius DSM 25168 [CP093313]
6703414
6703330
-
Leu
TAG
-
¡û
Identical group No.235377 (1 seq.)
>C09100228
CP001472
Acidobacteriota
Acidobacterium capsulatum ATCC 51196 [CP001472]
3912444
3912360
-
Leu
TAG
[Ensembl]
¡û
Identical group No.235571 (2 seq.)
>W2010781854
LMUS01000006
Acidobacteriota
Granulicella sp. L56 [LMUS]
564037
564121
+
Leu
TAG
[ENA]
¡û
>W1710575772
FOZL01000002
Acidobacteriota
Granulicella pectinivorans [FOZL]
586155
586239
+
Leu
TAG
[ENA]
¡û
Identical group No.237333 (1 seq.)
>W2011634451
SMGK01000002
Acidobacteriota
Acidipila rosea DSM 103428 [SMGK]
356844
356760
-
Leu
TAG
[ENA]
¡û
Identical group No.237569 (2 seq.)
>W2310020839
BSDC01000003
Acidobacteriota
Geothrix edaphica Red802 [BSDC]
311367
311451
+
Leu
TAG
[ENA]
¡û
>W2310020868
BSDD01000003
Acidobacteriota
Geothrix rubra Red803 [BSDD]
303514
303598
+
Leu
TAG
[ENA]
¡û
Identical group No.241240 (2 seq.)
>W1610576117
LAIJ01000012
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
549262
549346
+
Leu
TAG
[ENA]
¡û
>W1710694381
LAIJ01000012
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
549262
549346
+
Leu
TAG
[ENA]
¡û
Identical group No.241582 (1 seq.)
>W2110093294
CAJCHP010000324
Acidobacteriota
Acidobacteriaceae bacterium [CAJCHP]
1276
1195
-
Leu
TAG
[ENA]
¡û
Identical group No.241708 (1 seq.)
>W2110520545
JAFREP010000005
Acidobacteriota
Acanthopleuribacter pedis KCTC 12899 [JAFREP]
182522
182603
+
Leu
TAG
[ENA]
¡û
Identical group No.241999 (1 seq.)
>W1711574684
MNFW01000272
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_58_4 [MNFW]
13201
13117
-
Leu
TAG
[ENA]
¡û
Identical group No.242070 (1 seq.)
>W121017786
AGSB01000060
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
47397
47481
+
Leu
TAG
[ENA]
¡û
Identical group No.242329 (1 seq.)
>C211295902
CP071793
Acidobacteriota
Acanthopleuribacteraceae bacterium M133 [CP071793]
3443032
3442948
-
Leu
TAG
-
¡û
Identical group No.242366 (1 seq.)
>C231131728
CP073697
Acidobacteriota
Edaphobacter flagellatus HZ411 [CP073697]
3985827
3985743
-
Leu
TAG
-
¡û
Identical group No.242446 (1 seq.)
>C241010244
AP027080
Acidobacteriota
Mesoterricola silvestris W79 [AP027080]
1531596
1531512
-
Leu
TAG
-
¡û
Identical group No.242447 (1 seq.)
>C241010293
AP027081
Acidobacteriota
Mesoterricola sediminis W786 [AP027081]
1339758
1339674
-
Leu
TAG
-
¡û
Identical group No.247948 (3 seq.)
>W2010698595
JACHEK010000013
Acidobacteriota
Silvibacterium bohemicum DSM 103733 [JACHEK]
64565
64482
-
Leu
TAG
[ENA]
¡û
>W2110161163
JAAVVA010000001
Acidobacteriota
Acidobacteriaceae bacterium dw_441 [JAAVVA]
128149
128066
-
Leu
TAG
[ENA]
¡û
>W1511591123
LBHJ01000007
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
64546
64463
-
Leu
TAG
[ENA]
¡û
Identical group No.248800 (1 seq.)
>C231205627
CP085323
Acidobacteriota
Acidobacteriaceae bacterium ZG23-2 [CP085323]
2607865
2607782
-
Leu
TAG
-
¡û
Identical group No.249072 (5 seq.)
>W141817051
JQKI01000042
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
7057
7140
+
Leu
TAG
[ENA]
¡û
>W2010672983
JACCCW010000001
Acidobacteriota
Granulicella arctica X4EP2 [JACCCW]
105054
105137
+
Leu
TAG
[ENA]
¡û
>W2010781153
LMUD01000016
Acidobacteriota
Granulicella sp. S190 [LMUD]
177882
177799
-
Leu
TAG
[ENA]
¡û
>W2010781783
LMUR01000003
Acidobacteriota
Granulicella sp. L60 [LMUR]
50278
50361
+
Leu
TAG
[ENA]
¡û
>C231131670
CP073696
Acidobacteriota
Edaphobacter lichenicola DSM 104462 [CP073696]
2984427
2984510
+
Leu
TAG
-
¡û
Identical group No.252353 (1 seq.)
>W2110160837
JAAVUR010000012
Acidobacteriota
Granulicella sp. dw_53 [JAAVUR]
10215
10132
-
Leu
TAG
[ENA]
¡û
Identical group No.256186 (1 seq.)
>W2011961623
VANK01000008
Acidobacteriota
Acidobacteria bacterium AB60 [VANK]
166306
166223
-
Leu
TAG
[ENA]
¡û
Identical group No.261726 (1 seq.)
>W2110093332
CAJCHQ010000491
Acidobacteriota
Bryobacterales bacterium [CAJCHQ]
6887
6969
+
Leu
TAG
[ENA]
¡û
Identical group No.263960 (1 seq.)
>W2010781364
LMUH01000026
Acidobacteriota
Granulicella sp. S156 [LMUH]
362276
362195
-
Leu
TAG
[ENA]
¡û
Identical group No.277657 (1 seq.)
>W131179223
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1164486
1164563
+
Leu
TAG
[ENA]
¡û
Identical group No.445891 (1 seq.)
>W2110093327
CAJCHQ010000355
Acidobacteriota
Bryobacterales bacterium [CAJCHQ]
14982
15058
+
Leu
TAG
[ENA]
¡û
Identical group No.481303 (1 seq.)
>W2010704018
JACHIP010000002
Acidobacteriota
Granulicella aggregans M8UP14 [JACHIP]
618760
618836
+
Leu
TAG
[ENA]
¡û
Identical group No.703547 (1 seq.)
>W2110520576
JAFREP010000041
Acidobacteriota
Acanthopleuribacter pedis KCTC 12899 [JAFREP]
48138
48066
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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