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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = TCC
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.554426 (1 seq.)
>W135005431
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1171743
1171818
+
Gly
TCC
[ENA]
¡û
Identical group No.564325 (2 seq.)
>W1711574212
MNEY01000138
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_56_16 [MNEY]
8189
8262
+
Gly
TCC
[ENA]
¡û
>W1711576154
MNKP01000109
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_55_15 [MNKP]
224
151
-
Gly
TCC
[ENA]
¡û
Identical group No.673523 (2 seq.)
>C121011832
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
1025182
1025108
-
Gly
TCC
[Ensembl]
¡û
>W1710534856
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
1537767
1537841
+
Gly
TCC
[ENA]
¡û
Identical group No.728440 (2 seq.)
>C024942
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
630334
630260
-
Gly
TCC
[Ensembl]
¡û
>W09102592
AAIA01000002
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
328549
328623
+
Gly
TCC
[ENA]
¡û
Identical group No.744704 (1 seq.)
>W1810047007
OKRF01000130
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA3 SbA3 Peat soil MAG SbA3 [OKRF]
15615
15689
+
Gly
TCC
[ENA]
¡û
Identical group No.776451 (1 seq.)
>W141730279
JNIF01000004
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
377726
377800
+
Gly
TCC
[ENA]
¡û
Identical group No.807085 (1 seq.)
>W131179257
ARMF01000009
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
254463
254536
+
Gly
TCC
[ENA]
¡û
Identical group No.813015 (1 seq.)
>W1711391157
MEKJ01000007
Acidobacteriota
Acidobacteria bacterium RBG_16_64_8 [MEKJ]
1533
1606
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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