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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = TCG
HIT:
31 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239420 (1 seq.)
>W1711575887
MNJR01000027
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
134021
134096
+
Arg
TCG
[ENA]
¡û
Identical group No.324563 (2 seq.)
>W131216804
ATWD01000001
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
4463035
4462959
-
Arg
TCG
[ENA]
¡û
>W141557276
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
795883
795959
+
Arg
TCG
[ENA]
¡û
Identical group No.336559 (1 seq.)
>W1910697375
MEKQ01000171
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20 [MEKQ]
5101
5177
+
Arg
TCG
[ENA]
¡û
Identical group No.338897 (1 seq.)
>W1711575362
MNIJ01000034
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_58_21 [MNIJ]
3363
3287
-
Arg
TCG
[ENA]
¡û
Identical group No.340754 (1 seq.)
>W131221844
AUAU01000018
Acidobacteriota
Geothrix fermentans DSM 14018 [AUAU]
53087
53163
+
Arg
TCG
[ENA]
¡û
Identical group No.348105 (4 seq.)
>W1910697522
MEKU01000082
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 [MEKU]
18005
18081
+
Arg
TCG
[ENA]
¡û
>W1910697601
MEKW01000051
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 [MEKW]
56541
56465
-
Arg
TCG
[ENA]
¡û
>W1910697821
MELD01000015
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14 [MELD]
1987
2063
+
Arg
TCG
[ENA]
¡û
>W1910697898
MELF01000008
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 [MELF]
125480
125404
-
Arg
TCG
[ENA]
¡û
Identical group No.362064 (4 seq.)
>W1711574216
MNEY01000166
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_56_16 [MNEY]
2696
2622
-
Arg
TCG
[ENA]
¡û
>W1711574962
MNGU01000062
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_56_11 [MNGU]
14562
14636
+
Arg
TCG
[ENA]
¡û
>W1711575270
MNHX01000034
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_56_11 [MNHX]
14447
14521
+
Arg
TCG
[ENA]
¡û
>W1711576160
MNKP01000171
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_55_15 [MNKP]
10367
10441
+
Arg
TCG
[ENA]
¡û
Identical group No.364289 (1 seq.)
>W131179251
ARMF01000008
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1166160
1166236
+
Arg
TCG
[ENA]
¡û
Identical group No.373629 (2 seq.)
>C11123025
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
1745274
1745198
-
Arg
TCG
[Ensembl]
¡û
>W11137297
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
1814276
1814200
-
Arg
TCG
[ENA]
¡û
Identical group No.374234 (1 seq.)
>C000192
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
226325
226249
-
Arg
TCG
[Ensembl]
¡û
Identical group No.380299 (2 seq.)
>W1910697441
MEKS01000048
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 [MEKS]
33063
32988
-
Arg
TCG
[ENA]
¡û
>W1910697755
MELA01000120
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11 [MELA]
17041
17116
+
Arg
TCG
[ENA]
¡û
Identical group No.380538 (1 seq.)
>W1810046993
OKRE01000153
Acidobacteriota
Candidatus Sulfotelmatobacter sp. SbA7 SbA7 Peat soil MAG SbA7 [OKRE]
8102
8178
+
Arg
TCG
[ENA]
¡û
Identical group No.383370 (2 seq.)
>C024915
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
6277952
6278028
+
Arg
TCG
[Ensembl]
¡û
>W09102605
AAIA01000015
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
18201
18125
-
Arg
TCG
[ENA]
¡û
Identical group No.393172 (1 seq.)
>W121017785
AGSB01000060
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
47300
47376
+
Arg
TCG
[ENA]
¡û
Identical group No.402615 (1 seq.)
>W141817026
JQKI01000006
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
11036
10960
-
Arg
TCG
[ENA]
¡û
Identical group No.406591 (1 seq.)
>W1910697403
MEKR01000164
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
92143
92067
-
Arg
TCG
[ENA]
¡û
Identical group No.406725 (1 seq.)
>W1810047003
OKRF01000080
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA3 SbA3 Peat soil MAG SbA3 [OKRF]
1440
1364
-
Arg
TCG
[ENA]
¡û
Identical group No.414707 (1 seq.)
>W1910697489
MEKT01000207
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 [MEKT]
1247
1323
+
Arg
TCG
[ENA]
¡û
Identical group No.415255 (1 seq.)
>C161037482
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
1384043
1383967
-
Arg
TCG
-
¡û
Identical group No.415882 (2 seq.)
>W1610083316
CBXV010000005
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
79718
79794
+
Arg
TCG
[ENA]
¡û
>W1710088333
CBXV010000005
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
79718
79794
+
Arg
TCG
[ENA]
¡û
Identical group No.417402 (1 seq.)
>W131179192
ARME01000008
Acidobacteriota
Acidobacteriaceae bacterium KBS 89 [ARME]
634662
634586
-
Arg
TCG
[ENA]
¡û
Identical group No.429194 (1 seq.)
>C161083721
CP015136
Acidobacteriota
Luteitalea pratensis DSM 100886; HEG_-6_39 [CP015136]
6102037
6101961
-
Arg
TCG
-
¡û
Identical group No.429845 (1 seq.)
>W1711573394
MNDC01000007
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
84523
84599
+
Arg
TCG
[ENA]
¡û
Identical group No.441532 (1 seq.)
>C11106435
CP002514
Acidobacteriota
Chloracidobacterium thermophilum B [CP002514, CP002515]
1720656
1720578
-
Arg
TCG
[Ensembl]
¡û
Identical group No.445472 (1 seq.)
>W1910697886
MELE01000183
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b [MELE]
4298
4223
-
Arg
TCG
[ENA]
¡û
Identical group No.446234 (2 seq.)
>W1630012545
LLEU01000052
Acidobacteriota
Acidobacteria bacterium OLB17 [LLEU]
35954
36030
+
Arg
TCG
[ENA]
¡û
>W1730014966
LLEU01000052
Acidobacteriota
Acidobacteria bacterium OLB17 [LLEU]
35954
36030
+
Arg
TCG
[ENA]
¡û
Identical group No.446633 (1 seq.)
>W1711384777
MEDJ01000010
Acidobacteriota
Acidobacteria bacterium SCN 69-37 [MEDJ]
113397
113321
-
Arg
TCG
[ENA]
¡û
Identical group No.446638 (1 seq.)
>W1711391199
MEKL01000073
Acidobacteriota
Acidobacteria bacterium RBG_16_70_10 [MEKL]
3527
3451
-
Arg
TCG
[ENA]
¡û
Identical group No.446687 (1 seq.)
>W1711502603
MKSV01000009
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
188055
187979
-
Arg
TCG
[ENA]
¡û
Identical group No.447371 (3 seq.)
>W141730237
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
7853
7929
+
Arg
TCG
[ENA]
¡û
>W141730275
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
5951
5875
-
Arg
TCG
[ENA]
¡û
>W141730286
JNIF01000004
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
5186
5110
-
Arg
TCG
[ENA]
¡û
Identical group No.587401 (1 seq.)
>W141696032
JMFG01000020
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
139803
139878
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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