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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = TCT
HIT:
43 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.107137 (1 seq.)
>W1711575916
MNJR01000130
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
3729
3815
+
Arg
TCT
[ENA]
¡û
Identical group No.256129 (2 seq.)
>W1910697595
MEKW01000039
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 [MEKW]
65792
65715
-
Arg
TCT
[ENA]
¡û
>W1910697924
MELF01000038
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 [MELF]
103136
103059
-
Arg
TCT
[ENA]
¡û
Identical group No.264176 (1 seq.)
>W1711575919
MNJR01000142
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
125012
124935
-
Arg
TCT
[ENA]
¡û
Identical group No.277155 (1 seq.)
>W1711573437
MNDE01000006
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
11806
11882
+
Arg
TCT
[ENA]
¡û
Identical group No.299361 (1 seq.)
>W1810587151
QFFY01000003
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
720107
720031
-
Arg
TCT
[ENA]
¡û
Identical group No.302393 (2 seq.)
>C121011839
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
488575
488499
-
Arg
TCT
[Ensembl]
¡û
>W1710534863
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
2134266
2134342
+
Arg
TCT
[ENA]
¡û
Identical group No.303076 (1 seq.)
>W1711573495
MNDG01000120
Acidobacteriota
Acidobacteriales bacterium 13_2_20CM_55_8 [MNDG]
4651
4575
-
Arg
TCT
[ENA]
¡û
Identical group No.320934 (2 seq.)
>W1610576079
LAIJ01000004
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
39906
39982
+
Arg
TCT
[ENA]
¡û
>W1710694343
LAIJ01000004
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
39906
39982
+
Arg
TCT
[ENA]
¡û
Identical group No.324001 (3 seq.)
>W10119488
ADVX01000008
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
9730
9654
-
Arg
TCT
[ENA]
¡û
>W11125754
ADVX01000008
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
9730
9654
-
Arg
TCT
[ENA]
¡û
>C121006528
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
1976325
1976249
-
Arg
TCT
[Ensembl]
¡û
Identical group No.324562 (1 seq.)
>W131216794
ATWD01000001
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
3635362
3635438
+
Arg
TCT
[ENA]
¡û
Identical group No.338417 (2 seq.)
>W1710575740
FOZL01000001
Acidobacteriota
Granulicella pectinivorans [FOZL]
1675829
1675905
+
Arg
TCT
[ENA]
¡û
>W1710575741
FOZL01000001
Acidobacteriota
Granulicella pectinivorans [FOZL]
1685798
1685874
+
Arg
TCT
[ENA]
¡û
Identical group No.348106 (2 seq.)
>W1910697526
MEKU01000091
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 [MEKU]
6254
6330
+
Arg
TCT
[ENA]
¡û
>W1910697848
MELD01000121
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14 [MELD]
28593
28669
+
Arg
TCT
[ENA]
¡û
Identical group No.364291 (1 seq.)
>W131179270
ARMF01000011
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
289252
289176
-
Arg
TCT
[ENA]
¡û
Identical group No.364415 (2 seq.)
>W141557299
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
2564632
2564556
-
Arg
TCT
[ENA]
¡û
>W1910548795
FZOU01000001
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
141936
142012
+
Arg
TCT
[ENA]
¡û
Identical group No.373255 (1 seq.)
>W1711576149
MNKP01000100
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_55_15 [MNKP]
7357
7283
-
Arg
TCT
[ENA]
¡û
Identical group No.373627 (2 seq.)
>C11122987
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
363085
363161
+
Arg
TCT
[Ensembl]
¡û
>W11137259
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
432087
432163
+
Arg
TCT
[ENA]
¡û
Identical group No.374190 (1 seq.)
>C000160
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
3783475
3783551
+
Arg
TCT
[Ensembl]
¡û
Identical group No.392120 (1 seq.)
>W1710539066
FNVA01000008
Acidobacteriota
Bryocella elongata [FNVA]
153393
153317
-
Arg
TCT
[ENA]
¡û
Identical group No.393173 (1 seq.)
>W121017795
AGSB01000065
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
121442
121518
+
Arg
TCT
[ENA]
¡û
Identical group No.393514 (1 seq.)
>W141696038
JMFG01000024
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
20856
20932
+
Arg
TCT
[ENA]
¡û
Identical group No.393690 (1 seq.)
>W1511432667
JUGR01000001
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
2188231
2188307
+
Arg
TCT
[ENA]
¡û
Identical group No.399714 (1 seq.)
>W1711574952
MNGT01000272
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_65_5 [MNGT]
4417
4341
-
Arg
TCT
[ENA]
¡û
Identical group No.402617 (2 seq.)
>W1711502581
MKSV01000006
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
230126
230202
+
Arg
TCT
[ENA]
¡û
>W141817055
JQKI01000062
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
20847
20923
+
Arg
TCT
[ENA]
¡û
Identical group No.406716 (1 seq.)
>W1911748656
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
1160346
1160270
-
Arg
TCT
[ENA]
¡û
Identical group No.406728 (1 seq.)
>W1810047207
OMOG01000073
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
7825
7901
+
Arg
TCT
[ENA]
¡û
Identical group No.406924 (1 seq.)
>W1810915041
QVQT01000003
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
817957
817881
-
Arg
TCT
[ENA]
¡û
Identical group No.408989 (1 seq.)
>W141564296
JIAQ01000016
Acidobacteriota
Acidobacteriaceae bacterium URHE0068 [JIAQ]
69149
69073
-
Arg
TCT
[ENA]
¡û
Identical group No.415884 (2 seq.)
>W1610083319
CBXV010000005
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
5971
5895
-
Arg
TCT
[ENA]
¡û
>W1710088336
CBXV010000005
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
5971
5895
-
Arg
TCT
[ENA]
¡û
Identical group No.428398 (1 seq.)
>C181193317
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
4430747
4430671
-
Arg
TCT
-
¡û
Identical group No.429198 (1 seq.)
>C161083741
CP015136
Acidobacteriota
Luteitalea pratensis DSM 100886; HEG_-6_39 [CP015136]
2137822
2137746
-
Arg
TCT
-
¡û
Identical group No.429696 (1 seq.)
>W1711391139
MEKI01000137
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
17937
17861
-
Arg
TCT
[ENA]
¡û
Identical group No.429849 (1 seq.)
>W1711573425
MNDC01000197
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
36892
36968
+
Arg
TCT
[ENA]
¡û
Identical group No.429858 (2 seq.)
>W1711574654
MNFW01000014
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_58_4 [MNFW]
8848
8772
-
Arg
TCT
[ENA]
¡û
>W1711575255
MNHV01000060
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_60_7 [MNHV]
15897
15821
-
Arg
TCT
[ENA]
¡û
Identical group No.441709 (1 seq.)
>W141564059
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
2535286
2535210
-
Arg
TCT
[ENA]
¡û
Identical group No.446640 (1 seq.)
>W1711391208
MEKL01000098
Acidobacteriota
Acidobacteria bacterium RBG_16_70_10 [MEKL]
2683
2607
-
Arg
TCT
[ENA]
¡û
Identical group No.447263 (1 seq.)
>W131179158
ARMD01000023
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
43151
43075
-
Arg
TCT
[ENA]
¡û
Identical group No.447376 (1 seq.)
>W141730284
JNIF01000004
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
918274
918198
-
Arg
TCT
[ENA]
¡û
Identical group No.486984 (1 seq.)
>W1711574984
MNGV01000033
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_55_6 [MNGV]
19031
19106
+
Arg
TCT
[ENA]
¡û
Identical group No.562049 (1 seq.)
>W1910697347
MEKP01000220
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 [MEKP]
1902
1977
+
Arg
TCT
[ENA]
¡û
Identical group No.572507 (1 seq.)
>W1910697677
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
2595
2670
+
Arg
TCT
[ENA]
¡û
Identical group No.602426 (1 seq.)
>W1810047243
OMOG01000368
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
6185
6260
+
Arg
TCT
[ENA]
¡û
Identical group No.611698 (1 seq.)
>W1910697288
MEKM01000160
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
16518
16593
+
Arg
TCT
[ENA]
¡û
Identical group No.628909 (2 seq.)
>W1711574610
MNFT01000015
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_69_4 [MNFT]
353
278
-
Arg
TCT
[ENA]
¡û
>W1711576091
MNKK01000073
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_7 [MNKK]
6564
6639
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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