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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = TGA
HIT:
44 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46500 (3 seq.)
>W1711573467
MNDE01000176
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
3412
3323
-
Ser
TGA
[ENA]
¡û
>W1711573897
MNEB01000127
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_12 [MNEB]
5017
4928
-
Ser
TGA
[ENA]
¡û
>W1711575675
MNJF01000069
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_57_11 [MNJF]
7688
7599
-
Ser
TGA
[ENA]
¡û
Identical group No.49409 (1 seq.)
>W1810047102
OMOD01000150
Acidobacteriota
Candidatus Sulfotelmatobacter kueseliae SbA1 Peat soil MAG SbA1 [OMOD]
112080
112169
+
Ser
TGA
[ENA]
¡û
Identical group No.49477 (1 seq.)
>W1810587146
QFFY01000003
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
347897
347986
+
Ser
TGA
[ENA]
¡û
Identical group No.49846 (1 seq.)
>W1710534888
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
1939255
1939166
-
Ser
TGA
[ENA]
¡û
Identical group No.49956 (1 seq.)
>W1711573492
MNDG01000072
Acidobacteriota
Acidobacteriales bacterium 13_2_20CM_55_8 [MNDG]
8508
8419
-
Ser
TGA
[ENA]
¡û
Identical group No.52543 (1 seq.)
>W1910697773
MELB01000154
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_10 [MELB]
6979
6890
-
Ser
TGA
[ENA]
¡û
Identical group No.52706 (2 seq.)
>W1610576116
LAIJ01000012
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
536274
536363
+
Ser
TGA
[ENA]
¡û
>W1710694380
LAIJ01000012
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
536274
536363
+
Ser
TGA
[ENA]
¡û
Identical group No.53220 (4 seq.)
>W10119465
ADVX01000002
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
797876
797787
-
Ser
TGA
[ENA]
¡û
>W11125731
ADVX01000002
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
797876
797787
-
Ser
TGA
[ENA]
¡û
>C121006524
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
3173897
3173808
-
Ser
TGA
[Ensembl]
¡û
>W1710539048
FNVA01000003
Acidobacteriota
Bryocella elongata [FNVA]
115304
115393
+
Ser
TGA
[ENA]
¡û
Identical group No.53282 (2 seq.)
>W131216789
ATWD01000001
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
2369056
2369145
+
Ser
TGA
[ENA]
¡û
>W141557282
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
2321898
2321987
+
Ser
TGA
[ENA]
¡û
Identical group No.54876 (2 seq.)
>W1910697377
MEKQ01000199
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20 [MEKQ]
4904
4815
-
Ser
TGA
[ENA]
¡û
>W1910697644
MEKX01000137
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
95
6
-
Ser
TGA
[ENA]
¡û
Identical group No.55107 (1 seq.)
>W1710575770
FOZL01000001
Acidobacteriota
Granulicella pectinivorans [FOZL]
514445
514356
-
Ser
TGA
[ENA]
¡û
Identical group No.56521 (2 seq.)
>W1910697501
MEKU01000016
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 [MEKU]
16236
16325
+
Ser
TGA
[ENA]
¡û
>W1910697852
MELD01000136
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14 [MELD]
35043
34954
-
Ser
TGA
[ENA]
¡û
Identical group No.56522 (2 seq.)
>W1910697560
MEKV01000098
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
42679
42768
+
Ser
TGA
[ENA]
¡û
>W1910697792
MELC01000042
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
10474
10385
-
Ser
TGA
[ENA]
¡û
Identical group No.58545 (1 seq.)
>W1711575691
MNJG01000130
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_56_7 [MNJG]
12190
12279
+
Ser
TGA
[ENA]
¡û
Identical group No.58838 (1 seq.)
>C121011813
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
5025518
5025607
+
Ser
TGA
[Ensembl]
¡û
Identical group No.59015 (1 seq.)
>W131179247
ARMF01000008
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
622161
622250
+
Ser
TGA
[ENA]
¡û
Identical group No.59945 (2 seq.)
>W1910697598
MEKW01000044
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 [MEKW]
27195
27284
+
Ser
TGA
[ENA]
¡û
>W1910697918
MELF01000035
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 [MELF]
113528
113617
+
Ser
TGA
[ENA]
¡û
Identical group No.60304 (2 seq.)
>C11123008
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
4345413
4345324
-
Ser
TGA
[Ensembl]
¡û
>W11137280
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
4401696
4401607
-
Ser
TGA
[ENA]
¡û
Identical group No.60381 (1 seq.)
>C000171
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
5276776
5276687
-
Ser
TGA
[Ensembl]
¡û
Identical group No.61268 (2 seq.)
>W1910697413
MEKS01000002
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 [MEKS]
41073
41162
+
Ser
TGA
[ENA]
¡û
>W1910697739
MELA01000082
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11 [MELA]
34883
34972
+
Ser
TGA
[ENA]
¡û
Identical group No.61743 (2 seq.)
>C024925
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
9855570
9855481
-
Ser
TGA
[Ensembl]
¡û
>W09102625
AAIA01000069
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
38364
38275
-
Ser
TGA
[ENA]
¡û
Identical group No.63396 (1 seq.)
>C09100233
CP001472
Acidobacteriota
Acidobacterium capsulatum ATCC 51196 [CP001472]
2794410
2794321
-
Ser
TGA
[Ensembl]
¡û
Identical group No.64733 (1 seq.)
>W141817052
JQKI01000044
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
26068
25979
-
Ser
TGA
[ENA]
¡û
Identical group No.65318 (1 seq.)
>W1910697391
MEKR01000077
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
8908
8997
+
Ser
TGA
[ENA]
¡û
Identical group No.65332 (1 seq.)
>W1911748654
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
1291338
1291249
-
Ser
TGA
[ENA]
¡û
Identical group No.65334 (2 seq.)
>W1810047001
OKRF01000046
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA3 SbA3 Peat soil MAG SbA3 [OKRF]
5681
5592
-
Ser
TGA
[ENA]
¡û
>W1810047208
OMOG01000079
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
4833
4922
+
Ser
TGA
[ENA]
¡û
Identical group No.65374 (2 seq.)
>W141564063
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
1573143
1573054
-
Ser
TGA
[ENA]
¡û
>W1810915049
QVQT01000005
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
163959
164048
+
Ser
TGA
[ENA]
¡û
Identical group No.65693 (1 seq.)
>W141564311
JIAQ01000056
Acidobacteriota
Acidobacteriaceae bacterium URHE0068 [JIAQ]
14838
14927
+
Ser
TGA
[ENA]
¡û
Identical group No.67904 (1 seq.)
>W1711573474
MNDF01000224
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_56_17 [MNDF]
2313
2402
+
Ser
TGA
[ENA]
¡û
Identical group No.68722 (1 seq.)
>C181193304
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
4279759
4279847
+
Ser
TGA
-
¡û
Identical group No.71815 (1 seq.)
>W1910697893
MELE01000245
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b [MELE]
98
9
-
Ser
TGA
[ENA]
¡û
Identical group No.71957 (1 seq.)
>W1711384762
MEDJ01000004
Acidobacteriota
Acidobacteria bacterium SCN 69-37 [MEDJ]
183026
183115
+
Ser
TGA
[ENA]
¡û
Identical group No.72063 (1 seq.)
>W131179154
ARMD01000023
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
598394
598305
-
Ser
TGA
[ENA]
¡û
Identical group No.76550 (1 seq.)
>W131237257
AUNQ01000148
Acidobacteriota
Acidobacteria bacterium JGI 0001001-H03 [AUNQ]
18768
18680
-
Ser
TGA
[ENA]
¡û
Identical group No.79522 (1 seq.)
>W1711575212
MNHS01000096
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_5 [MNHS]
8990
9078
+
Ser
TGA
[ENA]
¡û
Identical group No.102082 (1 seq.)
>W1711391164
MEKJ01000142
Acidobacteriota
Acidobacteria bacterium RBG_16_64_8 [MEKJ]
1301
1214
-
Ser
TGA
[ENA]
¡û
Identical group No.103687 (1 seq.)
>W121017800
AGSB01000066
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
95635
95722
+
Ser
TGA
[ENA]
¡û
Identical group No.103733 (1 seq.)
>W141696035
JMFG01000020
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
149747
149660
-
Ser
TGA
[ENA]
¡û
Identical group No.109022 (1 seq.)
>W1711391133
MEKI01000091
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
90753
90666
-
Ser
TGA
[ENA]
¡û
Identical group No.166266 (1 seq.)
>W1711575218
MNHS01000133
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_5 [MNHS]
9544
9629
+
Ser
TGA
[ENA]
¡û
Identical group No.174328 (1 seq.)
>C161037461
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
1729653
1729738
+
Ser
TGA
-
¡û
Identical group No.174355 (2 seq.)
>W1610083343
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
757818
757733
-
Ser
TGA
[ENA]
¡û
>W1710088360
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
757818
757733
-
Ser
TGA
[ENA]
¡û
Identical group No.178490 (1 seq.)
>C11106422
CP002514
Acidobacteriota
Chloracidobacterium thermophilum B [CP002514, CP002515]
2492414
2492499
+
Ser
TGA
[Ensembl]
¡û
Identical group No.210323 (1 seq.)
>W1711575873
MNJR01000016
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
2105
2189
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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