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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = TGC
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237513 (1 seq.)
>W132000195
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1168025
1168103
+
Ala
TGC
[ENA]
¡û
Identical group No.416006 (1 seq.)
>W1730031551
MNJR01000142
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
124425
124348
-
Ala
TGC
[ENA]
¡û
Identical group No.506758 (2 seq.)
>W1610576095
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
2035439
2035514
+
Ala
TGC
[ENA]
¡û
>W1710694359
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
2035439
2035514
+
Ala
TGC
[ENA]
¡û
Identical group No.562044 (3 seq.)
>W1910697290
MEKM01000162
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
4444
4369
-
Ala
TGC
[ENA]
¡û
>W1910697297
MEKN01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57 [MEKN]
2666
2591
-
Ala
TGC
[ENA]
¡û
>W1910697321
MEKO01000021
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
8833
8758
-
Ala
TGC
[ENA]
¡û
Identical group No.565388 (1 seq.)
>C000173
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
5259742
5259667
-
Ala
TGC
[Ensembl]
¡û
Identical group No.574568 (1 seq.)
>W1711391173
MEKJ01000217
Acidobacteriota
Acidobacteria bacterium RBG_16_64_8 [MEKJ]
7660
7585
-
Ala
TGC
[ENA]
¡û
Identical group No.587400 (2 seq.)
>W1711391130
MEKI01000066
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
5158
5083
-
Ala
TGC
[ENA]
¡û
>W141696030
JMFG01000020
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
87392
87467
+
Ala
TGC
[ENA]
¡û
Identical group No.612895 (2 seq.)
>W1610083351
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
60927
60852
-
Ala
TGC
[ENA]
¡û
>W1710088368
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
60927
60852
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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