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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = TGG
HIT:
19 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95449 (1 seq.)
>W1910697363
MEKQ01000021
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20 [MEKQ]
6733
6820
+
Pro
TGG
[ENA]
¡û
Identical group No.264175 (1 seq.)
>W1711575885
MNJR01000027
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
133847
133924
+
Pro
TGG
[ENA]
¡û
Identical group No.299053 (1 seq.)
>W1810047085
OMOD01000111
Acidobacteriota
Candidatus Sulfotelmatobacter kueseliae SbA1 Peat soil MAG SbA1 [OMOD]
136555
136479
-
Pro
TGG
[ENA]
¡û
Identical group No.340852 (1 seq.)
>W131221855
AUAU01000036
Acidobacteriota
Geothrix fermentans DSM 14018 [AUAU]
208
132
-
Pro
TGG
[ENA]
¡û
Identical group No.348104 (2 seq.)
>W1910697519
MEKU01000070
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 [MEKU]
18769
18845
+
Pro
TGG
[ENA]
¡û
>W1910697834
MELD01000060
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14 [MELD]
17325
17401
+
Pro
TGG
[ENA]
¡û
Identical group No.364284 (1 seq.)
>W131179232
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1168112
1168188
+
Pro
TGG
[ENA]
¡û
Identical group No.371269 (3 seq.)
>W1910697291
MEKM01000174
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
6299
6223
-
Pro
TGG
[ENA]
¡û
>W1910697298
MEKN01000114
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57 [MEKN]
929
1005
+
Pro
TGG
[ENA]
¡û
>W1910697322
MEKO01000055
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
591
667
+
Pro
TGG
[ENA]
¡û
Identical group No.399557 (1 seq.)
>W1711391188
MEKK01000078
Acidobacteriota
Acidobacteria bacterium RBG_16_68_9 [MEKK]
1551
1477
-
Pro
TGG
[ENA]
¡û
Identical group No.406931 (1 seq.)
>W1830000689
OMOG01000102
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
26844
26920
+
Pro
TGG
[ENA]
¡û
Identical group No.414705 (1 seq.)
>W1910697462
MEKT01000046
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 [MEKT]
5842
5918
+
Pro
TGG
[ENA]
¡û
Identical group No.415682 (1 seq.)
>C161037478
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
1423057
1422981
-
Pro
TGG
-
¡û
Identical group No.415886 (2 seq.)
>W1610083328
CBXV010000007
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
296246
296170
-
Pro
TGG
[ENA]
¡û
>W1710088345
CBXV010000007
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
296246
296170
-
Pro
TGG
[ENA]
¡û
Identical group No.416385 (1 seq.)
>W1711575890
MNJR01000034
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
50118
50043
-
Pro
TGG
[ENA]
¡û
Identical group No.441706 (1 seq.)
>W141564043
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
2538340
2538416
+
Pro
TGG
[ENA]
¡û
Identical group No.445599 (1 seq.)
>W1810046929
OKRB01000024
Acidobacteriota
Candidatus Sulfotelmatomonas gaucii SbA5 Peat soil MAG SbA5 [OKRB]
55977
55901
-
Pro
TGG
[ENA]
¡û
Identical group No.446631 (1 seq.)
>W1711384763
MEDJ01000007
Acidobacteriota
Acidobacteria bacterium SCN 69-37 [MEDJ]
62439
62363
-
Pro
TGG
[ENA]
¡û
Identical group No.446639 (1 seq.)
>W1711391207
MEKL01000098
Acidobacteriota
Acidobacteria bacterium RBG_16_70_10 [MEKL]
3653
3577
-
Pro
TGG
[ENA]
¡û
Identical group No.446685 (1 seq.)
>W1711502582
MKSV01000006
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
226821
226745
-
Pro
TGG
[ENA]
¡û
Identical group No.574297 (1 seq.)
>W1730026806
MEKJ01000117
Acidobacteriota
Acidobacteria bacterium RBG_16_64_8 [MEKJ]
3642
3717
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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