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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = TGT
HIT:
25 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.43879 (1 seq.)
>W1711575258
MNHV01000108
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_60_7 [MNHV]
4411
4323
-
Thr
TGT
[ENA]
¡û
Identical group No.429196 (1 seq.)
>C161083724
CP015136
Acidobacteriota
Luteitalea pratensis DSM 100886; HEG_-6_39 [CP015136]
5808474
5808398
-
Thr
TGT
-
¡û
Identical group No.446632 (1 seq.)
>W1711384771
MEDJ01000009
Acidobacteriota
Acidobacteria bacterium SCN 69-37 [MEDJ]
417594
417518
-
Thr
TGT
[ENA]
¡û
Identical group No.456618 (2 seq.)
>W1730031480
MNDE01000096
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
12599
12524
-
Thr
TGT
[ENA]
¡û
>W1730031495
MNEB01000166
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_12 [MNEB]
6414
6489
+
Thr
TGT
[ENA]
¡û
Identical group No.553434 (1 seq.)
>C121011829
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
1025778
1025703
-
Thr
TGT
[Ensembl]
¡û
Identical group No.554510 (1 seq.)
>W131179231
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1167849
1167924
+
Thr
TGT
[ENA]
¡û
Identical group No.554517 (1 seq.)
>W131179269
ARMF01000011
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
318062
318137
+
Thr
TGT
[ENA]
¡û
Identical group No.572511 (2 seq.)
>W1910697449
MEKS01000057
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 [MEKS]
152
227
+
Thr
TGT
[ENA]
¡û
>W1910697748
MELA01000112
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11 [MELA]
17232
17307
+
Thr
TGT
[ENA]
¡û
Identical group No.586977 (1 seq.)
>C09100220
CP001472
Acidobacteriota
Acidobacterium capsulatum ATCC 51196 [CP001472]
3382867
3382942
+
Thr
TGT
[Ensembl]
¡û
Identical group No.587018 (2 seq.)
>W121017805
AGSB01000066
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
562
487
-
Thr
TGT
[ENA]
¡û
>W121017815
AGSB01000070
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
3349
3424
+
Thr
TGT
[ENA]
¡û
Identical group No.587405 (1 seq.)
>W141696045
JMFG01000037
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
488
413
-
Thr
TGT
[ENA]
¡û
Identical group No.587622 (1 seq.)
>W1511432693
JUGR01000004
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
2297
2222
-
Thr
TGT
[ENA]
¡û
Identical group No.594373 (1 seq.)
>W1711391184
MEKK01000057
Acidobacteriota
Acidobacteria bacterium RBG_16_68_9 [MEKK]
1663
1590
-
Thr
TGT
[ENA]
¡û
Identical group No.602418 (1 seq.)
>W1810047018
OKRF01000515
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA3 SbA3 Peat soil MAG SbA3 [OKRF]
12975
12900
-
Thr
TGT
[ENA]
¡û
Identical group No.602665 (1 seq.)
>W1810915052
QVQT01000005
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
513978
514053
+
Thr
TGT
[ENA]
¡û
Identical group No.612677 (1 seq.)
>C161037450
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
373011
373086
+
Thr
TGT
-
¡û
Identical group No.619663 (1 seq.)
>W1910548827
FZOU01000005
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
348867
348942
+
Thr
TGT
[ENA]
¡û
Identical group No.627354 (1 seq.)
>C181193294
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
1524972
1525047
+
Thr
TGT
-
¡û
Identical group No.648703 (1 seq.)
>W141730254
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
3017849
3017924
+
Thr
TGT
[ENA]
¡û
Identical group No.648811 (1 seq.)
>W1511591128
LBHJ01000012
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
479826
479901
+
Thr
TGT
[ENA]
¡û
Identical group No.719745 (3 seq.)
>W1910697272
MEKM01000040
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
720
646
-
Thr
TGT
[ENA]
¡û
>W1910697305
MEKN01000274
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57 [MEKN]
723
649
-
Thr
TGT
[ENA]
¡û
>W1910697313
MEKO01000004
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
724
650
-
Thr
TGT
[ENA]
¡û
Identical group No.726405 (1 seq.)
>W1910697670
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
1715
1789
+
Thr
TGT
[ENA]
¡û
Identical group No.744699 (1 seq.)
>W1911748630
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
2195080
2195154
+
Thr
TGT
[ENA]
¡û
Identical group No.744834 (1 seq.)
>W1830000699
OMOG01000368
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
5498
5572
+
Thr
TGT
[ENA]
¡û
Identical group No.752171 (1 seq.)
>W1711575907
MNJR01000083
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
4593
4518
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK