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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = TTC
HIT:
31 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.21353 (1 seq.)
>W1810047080
OMOD01000044
Acidobacteriota
Candidatus Sulfotelmatobacter kueseliae SbA1 Peat soil MAG SbA1 [OMOD]
7873
7784
-
Glu
TTC
[ENA]
¡û
Identical group No.250490 (1 seq.)
>W1910697648
MEKX01000159
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
24084
24161
+
Glu
TTC
[ENA]
¡û
Identical group No.254761 (1 seq.)
>W1711575217
MNHS01000119
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_5 [MNHS]
7566
7489
-
Glu
TTC
[ENA]
¡û
Identical group No.255024 (1 seq.)
>W141557275
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
717224
717301
+
Glu
TTC
[ENA]
¡û
Identical group No.258448 (2 seq.)
>C024916
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
6734555
6734632
+
Glu
TTC
[Ensembl]
¡û
>W09102619
AAIA01000053
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
25241
25164
-
Glu
TTC
[ENA]
¡û
Identical group No.259298 (1 seq.)
>W1910697704
MEKZ01000074
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
6835
6912
+
Glu
TTC
[ENA]
¡û
Identical group No.259299 (1 seq.)
>W1910697714
MEKZ01000235
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
6174
6097
-
Glu
TTC
[ENA]
¡û
Identical group No.261647 (1 seq.)
>W141817044
JQKI01000026
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
66964
67041
+
Glu
TTC
[ENA]
¡û
Identical group No.262221 (1 seq.)
>W1810047246
OMOG01000448
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
12605
12682
+
Glu
TTC
[ENA]
¡û
Identical group No.262244 (1 seq.)
>W1810915038
QVQT01000003
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
674987
675064
+
Glu
TTC
[ENA]
¡û
Identical group No.264367 (1 seq.)
>W131179191
ARME01000008
Acidobacteriota
Acidobacteriaceae bacterium KBS 89 [ARME]
554579
554656
+
Glu
TTC
[ENA]
¡û
Identical group No.269588 (1 seq.)
>W1711502596
MKSV01000007
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
250739
250662
-
Glu
TTC
[ENA]
¡û
Identical group No.324564 (1 seq.)
>W131216818
ATWD01000002
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
520447
520523
+
Glu
TTC
[ENA]
¡û
Identical group No.338898 (2 seq.)
>W1711573418
MNDC01000147
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
31526
31602
+
Glu
TTC
[ENA]
¡û
>W1711575367
MNIJ01000161
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_58_21 [MNIJ]
13207
13131
-
Glu
TTC
[ENA]
¡û
Identical group No.364177 (1 seq.)
>W133003575
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1171243
1171319
+
Glu
TTC
[ENA]
¡û
Identical group No.402616 (1 seq.)
>W141817040
JQKI01000023
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
64657
64581
-
Glu
TTC
[ENA]
¡û
Identical group No.406734 (1 seq.)
>W1810047222
OMOG01000102
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
27934
28010
+
Glu
TTC
[ENA]
¡û
Identical group No.415686 (1 seq.)
>C161037488
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
1087952
1087876
-
Glu
TTC
-
¡û
Identical group No.526427 (5 seq.)
>C181193288
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
257587
257662
+
Glu
TTC
-
¡û
>C09100238
CP001472
Acidobacteriota
Acidobacterium capsulatum ATCC 51196 [CP001472]
1795974
1795899
-
Glu
TTC
[Ensembl]
¡û
>W1911748658
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
1009112
1009037
-
Glu
TTC
[ENA]
¡û
>W1710539072
FNVA01000013
Acidobacteriota
Bryocella elongata [FNVA]
21009
21084
+
Glu
TTC
[ENA]
¡û
>W1710575753
FOZL01000001
Acidobacteriota
Granulicella pectinivorans [FOZL]
4375039
4375114
+
Glu
TTC
[ENA]
¡û
Identical group No.564884 (2 seq.)
>C11122999
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
3333476
3333551
+
Glu
TTC
[Ensembl]
¡û
>W11137271
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
3389759
3389834
+
Glu
TTC
[ENA]
¡û
Identical group No.619662 (1 seq.)
>W1910548813
FZOU01000002
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
177218
177143
-
Glu
TTC
[ENA]
¡û
Identical group No.648648 (1 seq.)
>W131179144
ARMD01000021
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
246891
246816
-
Glu
TTC
[ENA]
¡û
Identical group No.657035 (3 seq.)
>W1711573456
MNDE01000119
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
7489
7415
-
Glu
TTC
[ENA]
¡û
>W1711573877
MNEA01000106
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_6 [MNEA]
29052
28978
-
Glu
TTC
[ENA]
¡û
>W1711574691
MNFX01000003
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_57_6 [MNFX]
4069
4143
+
Glu
TTC
[ENA]
¡û
Identical group No.657056 (3 seq.)
>W1711574645
MNFV01000083
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_61_5 [MNFV]
5003
4929
-
Glu
TTC
[ENA]
¡û
>W1711575259
MNHV01000128
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_60_7 [MNHV]
8297
8371
+
Glu
TTC
[ENA]
¡û
>W1711576130
MNKN01000022
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_60_10 [MNKN]
5630
5704
+
Glu
TTC
[ENA]
¡û
Identical group No.726404 (1 seq.)
>W1910697668
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
1552
1626
+
Glu
TTC
[ENA]
¡û
Identical group No.727584 (1 seq.)
>W1711391162
MEKJ01000117
Acidobacteriota
Acidobacteria bacterium RBG_16_64_8 [MEKJ]
282
356
+
Glu
TTC
[ENA]
¡û
Identical group No.735119 (1 seq.)
>W121017804
AGSB01000066
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
95299
95225
-
Glu
TTC
[ENA]
¡û
Identical group No.735314 (1 seq.)
>W141696031
JMFG01000020
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
101538
101612
+
Glu
TTC
[ENA]
¡û
Identical group No.751199 (1 seq.)
>W1910697286
MEKM01000149
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
4384
4310
-
Glu
TTC
[ENA]
¡û
Identical group No.761646 (1 seq.)
>W1711391120
MEKI01000025
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
13136
13062
-
Glu
TTC
[ENA]
¡û
Identical group No.775936 (1 seq.)
>W1711384793
MEDJ01000020
Acidobacteriota
Acidobacteria bacterium SCN 69-37 [MEDJ]
143640
143566
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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