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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = TTG
HIT:
32 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.78445 (2 seq.)
>W1910697534
MEKV01000037
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
2424
2510
+
Gln
TTG
[ENA]
¡û
>W1910697817
MELC01000086
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
239828
239914
+
Gln
TTG
[ENA]
¡û
Identical group No.406732 (1 seq.)
>W1810047218
OMOG01000102
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
27597
27673
+
Gln
TTG
[ENA]
¡û
Identical group No.554507 (1 seq.)
>W131179226
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1165548
1165623
+
Gln
TTG
[ENA]
¡û
Identical group No.587393 (1 seq.)
>W141696012
JMFG01000004
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
14065
14140
+
Gln
TTG
[ENA]
¡û
Identical group No.657036 (1 seq.)
>W1711573458
MNDE01000124
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
9453
9527
+
Gln
TTG
[ENA]
¡û
Identical group No.673969 (1 seq.)
>W1711574981
MNGV01000006
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_55_6 [MNGV]
2649
2575
-
Gln
TTG
[ENA]
¡û
Identical group No.719750 (2 seq.)
>W1910697613
MEKW01000074
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 [MEKW]
15083
15009
-
Gln
TTG
[ENA]
¡û
>W1910697917
MELF01000034
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 [MELF]
15088
15014
-
Gln
TTG
[ENA]
¡û
Identical group No.735115 (1 seq.)
>W121017780
AGSB01000055
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
22508
22582
+
Gln
TTG
[ENA]
¡û
Identical group No.751772 (1 seq.)
>C161037475
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
1972094
1972020
-
Gln
TTG
-
¡û
Identical group No.752162 (1 seq.)
>W1711574694
MNFX01000022
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_57_6 [MNFX]
6840
6766
-
Gln
TTG
[ENA]
¡û
Identical group No.761647 (1 seq.)
>W1711391124
MEKI01000058
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
16392
16466
+
Gln
TTG
[ENA]
¡û
Identical group No.787709 (1 seq.)
>W1810587159
QFFY01000004
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
78537
78464
-
Gln
TTG
[ENA]
¡û
Identical group No.788629 (2 seq.)
>C121011793
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
604562
604635
+
Gln
TTG
[Ensembl]
¡û
>W1710534887
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
2009231
2009158
-
Gln
TTG
[ENA]
¡û
Identical group No.794017 (2 seq.)
>W1610576088
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
690251
690324
+
Gln
TTG
[ENA]
¡û
>W1710694352
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
690251
690324
+
Gln
TTG
[ENA]
¡û
Identical group No.794853 (4 seq.)
>W131216811
ATWD01000001
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
2632448
2632375
-
Gln
TTG
[ENA]
¡û
>W10119457
ADVX01000001
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
222394
222321
-
Gln
TTG
[ENA]
¡û
>W11125723
ADVX01000001
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
222394
222321
-
Gln
TTG
[ENA]
¡û
>C121006515
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
5952789
5952716
-
Gln
TTG
[Ensembl]
¡û
Identical group No.798938 (1 seq.)
>W1910697645
MEKX01000140
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
12630
12703
+
Gln
TTG
[ENA]
¡û
Identical group No.799427 (1 seq.)
>W1710575744
FOZL01000001
Acidobacteriota
Granulicella pectinivorans [FOZL]
1956240
1956313
+
Gln
TTG
[ENA]
¡û
Identical group No.806506 (4 seq.)
>W1711575203
MNHS01000038
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_5 [MNHS]
13214
13287
+
Gln
TTG
[ENA]
¡û
>W1711575230
MNHT01000019
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_10 [MNHT]
7271
7344
+
Gln
TTG
[ENA]
¡û
>W1711576080
MNKK01000009
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_7 [MNKK]
9702
9775
+
Gln
TTG
[ENA]
¡û
>W1711576108
MNKL01000110
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_14 [MNKL]
17458
17531
+
Gln
TTG
[ENA]
¡û
Identical group No.806508 (1 seq.)
>W1711575219
MNHS01000136
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_5 [MNHS]
6079
6152
+
Gln
TTG
[ENA]
¡û
Identical group No.807083 (1 seq.)
>W131179216
ARMF01000004
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
834649
834722
+
Gln
TTG
[ENA]
¡û
Identical group No.807112 (1 seq.)
>W141557298
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
3461155
3461082
-
Gln
TTG
[ENA]
¡û
Identical group No.809237 (3 seq.)
>W1910697271
MEKM01000027
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
9439
9366
-
Gln
TTG
[ENA]
¡û
>W1910697311
MEKN01000324
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57 [MEKN]
9448
9375
-
Gln
TTG
[ENA]
¡û
>W1910697318
MEKO01000015
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
9877
9804
-
Gln
TTG
[ENA]
¡û
Identical group No.810182 (5 seq.)
>W131179153
ARMD01000023
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
717550
717477
-
Gln
TTG
[ENA]
¡û
>C000170
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
5385160
5385087
-
Gln
TTG
[Ensembl]
¡û
>W141564061
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
1672382
1672309
-
Gln
TTG
[ENA]
¡û
>W141817023
JQKI01000005
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
172183
172256
+
Gln
TTG
[ENA]
¡û
>C09100235
CP001472
Acidobacteriota
Acidobacterium capsulatum ATCC 51196 [CP001472]
2423796
2423723
-
Gln
TTG
[Ensembl]
¡û
Identical group No.812419 (1 seq.)
>W1910697660
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
434
507
+
Gln
TTG
[ENA]
¡û
Identical group No.813014 (1 seq.)
>W1711391153
MEKJ01000001
Acidobacteriota
Acidobacteria bacterium RBG_16_64_8 [MEKJ]
5987
6060
+
Gln
TTG
[ENA]
¡û
Identical group No.820830 (1 seq.)
>W1810915051
QVQT01000005
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
464515
464588
+
Gln
TTG
[ENA]
¡û
Identical group No.821357 (1 seq.)
>W141564304
JIAQ01000029
Acidobacteriota
Acidobacteriaceae bacterium URHE0068 [JIAQ]
73393
73466
+
Gln
TTG
[ENA]
¡û
Identical group No.826000 (1 seq.)
>W1910548839
FZOU01000007
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
8058
7985
-
Gln
TTG
[ENA]
¡û
Identical group No.826374 (2 seq.)
>W1711386864
MEFW01000113
Acidobacteriota
Granulicella sp. SCN 62-9 [MEFW]
2117
2044
-
Gln
TTG
[ENA]
¡û
>W1711502569
MKSV01000003
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
744069
743996
-
Gln
TTG
[ENA]
¡û
Identical group No.828103 (1 seq.)
>C181193327
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
1771779
1771706
-
Gln
TTG
-
¡û
Identical group No.835378 (1 seq.)
>W1810046953
OKRB01000130
Acidobacteriota
Candidatus Sulfotelmatomonas gaucii SbA5 Peat soil MAG SbA5 [OKRB]
67435
67508
+
Gln
TTG
[ENA]
¡û
Identical group No.835837 (1 seq.)
>W141730285
JNIF01000004
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
66427
66354
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK