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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = TTT
HIT:
29 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.364206 (1 seq.)
>W135005429
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1171072
1171148
+
Lys
TTT
[ENA]
¡û
Identical group No.380292 (1 seq.)
>W1910697671
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
1961
2037
+
Lys
TTT
[ENA]
¡û
Identical group No.482669 (1 seq.)
>W1810047075
OMOD01000019
Acidobacteriota
Candidatus Sulfotelmatobacter kueseliae SbA1 Peat soil MAG SbA1 [OMOD]
6283
6208
-
Lys
TTT
[ENA]
¡û
Identical group No.483013 (1 seq.)
>W1810587131
QFFY01000001
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
982604
982679
+
Lys
TTT
[ENA]
¡û
Identical group No.562046 (3 seq.)
>W1910697337
MEKP01000057
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 [MEKP]
1956
2031
+
Lys
TTT
[ENA]
¡û
>W1910697411
MEKR01000193
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
4325
4400
+
Lys
TTT
[ENA]
¡û
>W1910697699
MEKZ01000027
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
1469
1544
+
Lys
TTT
[ENA]
¡û
Identical group No.565363 (1 seq.)
>C000150
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
782919
782994
+
Lys
TTT
[Ensembl]
¡û
Identical group No.585868 (1 seq.)
>W1710539039
FNVA01000001
Acidobacteriota
Bryocella elongata [FNVA]
233393
233318
-
Lys
TTT
[ENA]
¡û
Identical group No.586976 (1 seq.)
>C09100247
CP001472
Acidobacteriota
Acidobacterium capsulatum ATCC 51196 [CP001472]
103470
103395
-
Lys
TTT
[Ensembl]
¡û
Identical group No.587396 (1 seq.)
>W141696016
JMFG01000008
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
222233
222308
+
Lys
TTT
[ENA]
¡û
Identical group No.587625 (1 seq.)
>W1511432654
JUGR01000001
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
204068
204143
+
Lys
TTT
[ENA]
¡û
Identical group No.602411 (1 seq.)
>W1911748646
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
2880144
2880069
-
Lys
TTT
[ENA]
¡û
Identical group No.602663 (1 seq.)
>W1810915025
QVQT01000001
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
702721
702796
+
Lys
TTT
[ENA]
¡û
Identical group No.612682 (1 seq.)
>C161037487
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
1088127
1088052
-
Lys
TTT
-
¡û
Identical group No.613446 (1 seq.)
>W1711575913
MNJR01000117
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
14945
15021
+
Lys
TTT
[ENA]
¡û
Identical group No.613448 (1 seq.)
>W1711575921
MNJR01000142
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
123973
123898
-
Lys
TTT
[ENA]
¡û
Identical group No.619660 (1 seq.)
>W1910548800
FZOU01000001
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
1416558
1416483
-
Lys
TTT
[ENA]
¡û
Identical group No.627355 (1 seq.)
>C181193315
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
5929649
5929574
-
Lys
TTT
-
¡û
Identical group No.628747 (1 seq.)
>W1711391119
MEKI01000025
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
14320
14245
-
Lys
TTT
[ENA]
¡û
Identical group No.642214 (1 seq.)
>W141564065
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
1151052
1150977
-
Lys
TTT
[ENA]
¡û
Identical group No.646765 (1 seq.)
>W1810046937
OKRB01000078
Acidobacteriota
Candidatus Sulfotelmatomonas gaucii SbA5 Peat soil MAG SbA5 [OKRB]
90954
90879
-
Lys
TTT
[ENA]
¡û
Identical group No.648604 (1 seq.)
>W131179145
ARMD01000022
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
20425
20500
+
Lys
TTT
[ENA]
¡û
Identical group No.648705 (1 seq.)
>W141730260
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
3897291
3897216
-
Lys
TTT
[ENA]
¡û
Identical group No.648812 (1 seq.)
>W1511591101
LBHJ01000001
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
219887
219812
-
Lys
TTT
[ENA]
¡û
Identical group No.657057 (1 seq.)
>W1711576136
MNKN01000100
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_60_10 [MNKN]
425
499
+
Lys
TTT
[ENA]
¡û
Identical group No.704294 (2 seq.)
>W1910697568
MEKV01000114
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
68186
68257
+
Lys
TTT
[ENA]
¡û
>W1910697780
MELC01000024
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
120975
120904
-
Lys
TTT
[ENA]
¡û
Identical group No.726408 (2 seq.)
>W1910697444
MEKS01000050
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 [MEKS]
42025
41954
-
Lys
TTT
[ENA]
¡û
>W1910697724
MELA01000008
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11 [MELA]
7289
7360
+
Lys
TTT
[ENA]
¡û
Identical group No.744705 (1 seq.)
>W1810047012
OKRF01000360
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA3 SbA3 Peat soil MAG SbA3 [OKRF]
19175
19249
+
Lys
TTT
[ENA]
¡û
Identical group No.751201 (1 seq.)
>W1910697471
MEKT01000117
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 [MEKT]
17286
17360
+
Lys
TTT
[ENA]
¡û
Identical group No.775938 (1 seq.)
>W1711391200
MEKL01000076
Acidobacteriota
Acidobacteria bacterium RBG_16_70_10 [MEKL]
3683
3757
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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