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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ackermannviridae
Anticodon = CAT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300063 (4 seq.)
>PHG14102042
KC139523
Myoviridae
Salmonella phage FSL SP-063 TN106 (KC139523)
3574
3650
+
Met
CAT
[ENA]
¡û
>PHG14102076
KC139564
Myoviridae
Salmonella phage FSL SP-029 TN106 (KC139564)
3564
3640
+
Met
CAT
[ENA]
¡û
>PHG14102624
KF669653
Ackermannviridae
Salmonella phage Marshall PM6 (KF669653)
22243
22167
-
Met
CAT
[ENA]
¡û
>PHG14102628
KF669654
Ackermannviridae
Salmonella phage Maynard PM6 (KF669654)
20610
20534
-
Met
CAT
[ENA]
¡û
Identical group No.406208 (2 seq.)
>WENV170560360
CYGL01000829
[CYGL] human gut metagenome;
5913
5837
-
Met
CAT
[ENA]
¢þ
>PHG181001005
KP797973
Ackermannviridae
Salmonella phage Det7 (KP797973)
133150
133074
-
Met
CAT
[ENA]
¡û
Identical group No.703740 (4 seq.)
>PHG181003727
KY000003
Ackermannviridae
Salmonella phage STP07 (KY000003)
3339
3413
+
Met
CAT
[ENA]
¡û
>PHG181006781
MG428992
Ackermannviridae
Salmonella phage Mutine (MG428992)
22886
22812
-
Met
CAT
[ENA]
¡û
>PHG14101174
JN593240
Ackermannviridae
Escherichia virus CBA120 vB_EcoM_CBA120 (JN593240)
136807
136881
+
Met
CAT
[ENA]
¡û
>PHG14103147
KM389299
unclassified bacterial viruses
Escherichia phage CBA6 (KM389299)
3220
3294
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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