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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ackermannviridae
Anticodon = CCA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483813 (4 seq.)
>PHG14102043
KC139523
Myoviridae
Salmonella phage FSL SP-063 TN106 (KC139523)
3719
3794
+
Trp
CCA
[ENA]
¡û
>PHG14102077
KC139564
Myoviridae
Salmonella phage FSL SP-029 TN106 (KC139564)
3709
3784
+
Trp
CCA
[ENA]
¡û
>PHG14102625
KF669653
Ackermannviridae
Salmonella phage Marshall PM6 (KF669653)
22098
22023
-
Trp
CCA
[ENA]
¡û
>PHG14102629
KF669654
Ackermannviridae
Salmonella phage Maynard PM6 (KF669654)
20465
20390
-
Trp
CCA
[ENA]
¡û
Identical group No.628089 (1 seq.)
>PHG14100010
AB797215
Ackermannviridae
Klebsiella phage 0507-KN2-1 (AB797215)
84552
84477
-
Trp
CCA
[ENA]
¡û
Identical group No.695884 (1 seq.)
>PHG181004482
LC121084
Ackermannviridae
Ralstonia phage RSP15 (LC121084)
87481
87407
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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