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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ackermannviridae
Anticodon = GTA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.222912 (6 seq.)
>WENV170560362
CYGL01000829
[CYGL] human gut metagenome;
5074
4991
-
Tyr
GTA
[ENA]
¢þ
>PHG181001007
KP797973
Ackermannviridae
Salmonella phage Det7 (KP797973)
132569
132486
-
Tyr
GTA
[ENA]
¡û
>PHG181004520
LC373201
Ackermannviridae
Enterobacter phage EspM4VN (LC373201)
57339
57256
-
Tyr
GTA
[ENA]
¡û
>PHG14100092
FJ373894
Ackermannviridae
Shigella phage Ag3 wBol1b (FJ373894)
138530
138613
+
Tyr
GTA
[ENA]
¡û
>PHG14101797
JX128257
Ackermannviridae
Escherichia phage ECML-4 Lu11 (JX128257)
76136
76053
-
Tyr
GTA
[ENA]
¡û
>PHG14101875
JX181828
Ackermannviridae
Salmonella phage STML-13-1 STML-198 (JX181828)
113125
113208
+
Tyr
GTA
[ENA]
¡û
Identical group No.223589 (8 seq.)
>WENV170560264
CYGL01000306
[CYGL] human gut metagenome;
5272
5189
-
Tyr
GTA
[ENA]
¢þ
>PHG181001289
KR296692
Ackermannviridae
Salmonella phage 38 (KR296692)
18200
18117
-
Tyr
GTA
[ENA]
¡û
>PHG181003325
KX438380
Ackermannviridae
Salmonella phage vB-SalM-PM10 (KX438380)
103283
103366
+
Tyr
GTA
[ENA]
¡û
>PHG181004247
KY630163
Ackermannviridae
Salmonella phage S8 (KY630163)
97847
97764
-
Tyr
GTA
[ENA]
¡û
>PHG181004840
MF001362
Ackermannviridae
Salmonella phage SP1 (MF001362)
132567
132650
+
Tyr
GTA
[ENA]
¡û
>PHG181007199
MG748547
Ackermannviridae
Escherichia phage EP75 (MG748547)
116001
115918
-
Tyr
GTA
[ENA]
¡û
>PHG181008080
MH370368
Ackermannviridae
Salmonella phage S115 (MH370368)
139498
139581
+
Tyr
GTA
[ENA]
¡û
>PHG14101043
JN126049
Ackermannviridae
Salmonella phage Sh19 Shauna1 (JN126049)
138497
138580
+
Tyr
GTA
[ENA]
¡û
Identical group No.224129 (2 seq.)
>PHG181002585
KX147096
Ackermannviridae
Serratia phage vB-Sru-IME250 (KX147096)
65781
65698
-
Tyr
GTA
[ENA]
¡û
>PHG181003774
KY073123
Ackermannviridae
Serratia phage vB-Sru-IME250 (KY073123)
65781
65698
-
Tyr
GTA
[ENA]
¡û
Identical group No.226723 (2 seq.)
>PHG181006779
MG428991
Ackermannviridae
Klebsiella phage May (MG428991)
19458
19375
-
Tyr
GTA
[ENA]
¡û
>PHG181007281
MG770379
Ackermannviridae
Klebsiella virus vB_KpnM_KpS110 (MG770379)
73616
73533
-
Tyr
GTA
[ENA]
¡û
Identical group No.232736 (4 seq.)
>PHG181008107
MH370370
Ackermannviridae
Salmonella phage S117 (MH370370)
138701
138782
+
Tyr
GTA
[ENA]
¡û
>PHG14100147
FQ312032
Ackermannviridae
Salmonella virus ViI phi 2 (FQ312032)
138314
138395
+
Tyr
GTA
[ENA]
¡û
>PHG14102785
KJ174318
Ackermannviridae
Salmonella phage vB_SalM_SJ3 VD13 (KJ174318)
81962
81881
-
Tyr
GTA
[ENA]
¡û
>PHG14103151
KM389299
unclassified bacterial viruses
Escherichia phage CBA6 (KM389299)
4750
4831
+
Tyr
GTA
[ENA]
¡û
Identical group No.232813 (1 seq.)
>PHG181004476
LC121084
Ackermannviridae
Ralstonia phage RSP15 (LC121084)
93022
92941
-
Tyr
GTA
[ENA]
¡û
Identical group No.232972 (2 seq.)
>PHG181002597
KX171211
Ackermannviridae
Salmonella phage vB_SenM-2 (KX171211)
132905
132824
-
Tyr
GTA
[ENA]
¡û
>PHG181008111
MH370371
Ackermannviridae
Salmonella phage S118 (MH370371)
137943
138024
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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