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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ackermannviridae
Anticodon = GTT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.536355 (10 seq.)
>WENV170560361
CYGL01000829
[CYGL] human gut metagenome;
5407
5332
-
Asn
GTT
[ENA]
¢þ
>PHG181001006
KP797973
Ackermannviridae
Salmonella phage Det7 (KP797973)
132902
132827
-
Asn
GTT
[ENA]
¡û
>PHG181001288
KR296692
Ackermannviridae
Salmonella phage 38 (KR296692)
19030
18955
-
Asn
GTT
[ENA]
¡û
>PHG181003324
KX438380
Ackermannviridae
Salmonella phage vB-SalM-PM10 (KX438380)
102153
102228
+
Asn
GTT
[ENA]
¡û
>PHG181004519
LC373201
Ackermannviridae
Enterobacter phage EspM4VN (LC373201)
57672
57597
-
Asn
GTT
[ENA]
¡û
>PHG181008079
MH370368
Ackermannviridae
Salmonella phage S115 (MH370368)
138666
138741
+
Asn
GTT
[ENA]
¡û
>PHG181008106
MH370370
Ackermannviridae
Salmonella phage S117 (MH370370)
137869
137944
+
Asn
GTT
[ENA]
¡û
>PHG14100091
FJ373894
Ackermannviridae
Shigella phage Ag3 wBol1b (FJ373894)
138197
138272
+
Asn
GTT
[ENA]
¡û
>PHG14100583
HQ259103
Ackermannviridae
Salmonella phage SFP10 ENT47670 (HQ259103)
137939
138014
+
Asn
GTT
[ENA]
¡û
>PHG14102784
KJ174318
Ackermannviridae
Salmonella phage vB_SalM_SJ3 VD13 (KJ174318)
82794
82719
-
Asn
GTT
[ENA]
¡û
Identical group No.593517 (3 seq.)
>PHG181006773
MG428990
Ackermannviridae
Klebsiella phage Menlow (MG428990)
20486
20411
-
Asn
GTT
[ENA]
¡û
>PHG181007280
MG770379
Ackermannviridae
Klebsiella virus vB_KpnM_KpS110 (MG770379)
74279
74204
-
Asn
GTT
[ENA]
¡û
>PHG14103149
KM389299
unclassified bacterial viruses
Escherichia phage CBA6 (KM389299)
3621
3696
+
Asn
GTT
[ENA]
¡û
Identical group No.628088 (2 seq.)
>WENV180311796
OBJT01581566
[OBJT] soil metagenome; soil
211
136
-
Asn
GTT
[ENA]
¢þ
>PHG14100011
AB797215
Ackermannviridae
Klebsiella phage 0507-KN2-1 (AB797215)
84467
84392
-
Asn
GTT
[ENA]
¡û
Identical group No.672101 (4 seq.)
>PHG14102044
KC139523
Myoviridae
Salmonella phage FSL SP-063 TN106 (KC139523)
3803
3877
+
Asn
GTT
[ENA]
¡û
>PHG14102078
KC139564
Myoviridae
Salmonella phage FSL SP-029 TN106 (KC139564)
3793
3867
+
Asn
GTT
[ENA]
¡û
>PHG14102626
KF669653
Ackermannviridae
Salmonella phage Marshall PM6 (KF669653)
22014
21940
-
Asn
GTT
[ENA]
¡û
>PHG14102630
KF669654
Ackermannviridae
Salmonella phage Maynard PM6 (KF669654)
20381
20307
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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